1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggttgctcctatttcagtttttttattaaaagaagttcaacccttgaatttcaatttctttaccctttctcttgttacaaagtcttcttgataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCAAAGAAAATGATAGATGATGGAGCTGTGGAAAATATAGAGGCCATTTTTG
species | Oryza sativa |
transcript | LOC_Os01g37960.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTGTTGGGTTCTG-CAGGATACTTCAGGAACACCGTGATGAGCTGAAG GGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCAEST: gi|29663359|gb|CB659634.1|CB659634
genomic: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAGgttggctaaa ... ataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCA
EST: TGCTGTTGGGTTCTGCCAGGATACTTCTCGAACACCGTGATGAGCTGAAG GGTACCGTAGTACTTGTTTTCCAACCEST: gi|218485087|gb|FG957004.1|FG957004
genomic: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAGgttggctaaa ... ataactgtagGGTACCGTAGTACTTGTTTTCCAACC
EST: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAG GGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCAEST: gi|218497348|gb|FG955372.1|FG955372
genomic: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAGgttggctaaa ... ataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCA
EST: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAG GGTACCGTA-TACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCAEST: gi|58601345|gb|CK011873.1|CK011873
genomic: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAGgttggctaaa ... ataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCA
EST: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAG GGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCAEST: gi|58658282|gb|CK046962.1|CK046962
genomic: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAGgttggctaaa ... ataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCA
EST: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAG GGTACCGTAGTACTEST: gi|58684058|gb|CK072745.1|CK072745
genomic: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAGgttggctaaa ... ataactgtagGGTACCGTAGTACT
EST: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAG GGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCA
genomic: TGCTGTTGGGTTCTGCCAGGATACTTCAGGAACACCGTGATGAGCTGAAGgttggctaaa ... ataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCA
gaatttcaatttctttaccctttctcttgttacaaagtcttcttgataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCAAAGAAAATGATAGATGATGGAGCTGTGGAAAATATAGAGGCCATTTTTG
tgataac putative branch site (score: 60)
aatttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttgctcctatttcagtttttttattaaaagaagttcaacccttgaatttcaatttctttaccctttctcttgttacaaagtcttcttgataactgtagGGTACCGTAGTACTTGTTTTCCAACCAGCTGAGGAAGGTGGTGGTGGGGCAAAGAAAATGATAGATGATGGAGCTGTGGAAAATATAGAGGCCATTTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- ttgctcc
- - - - - - - - - - - - - -aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcttg