1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttctagtctagcccatgttatgtttccaatccttattttgtatcactattttacacagcacatcctaattaatgatgatgtgttatggctatttgtgcagCCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCTGTATTTGA
species | Oryza sativa |
transcript | LOC_Os01g24880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTG CCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCTEST: gi|58608025|gb|CK036058.1|CK036058
genomic: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTGgtaagggcaa ... atttgtgcagCCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCT
EST: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTG CCATTCCGCTTCCAATGGTGTCCTATNGGCCGCTGAGCCCAACTTCCATCTEST: gi|29615731|gb|CB620743.1|CB620743
genomic: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTGgtaagggcaa ... atttgtgcagCCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCT
EST: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTG CCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCTEST: gi|29656889|gb|CB653164.1|CB653164
genomic: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTGgtaagggcaa ... atttgtgcagCCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCT
EST: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTG CCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCT
genomic: AAGACTTTTATGATGCTAATCAACCAGAGACATCAAGGAGTGTCTTTTTGgtaagggcaa ... atttgtgcagCCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCT
ctattttacacagcacatcctaattaatgatgatgtgttatggctatttgtgcagCCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCTGTATTTGA
taattaatgatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctagtctagcccatgttatgtttccaatccttattttgtatcactattttacacagcacatcctaattaatgatgatgtgttatggctatttgtgcagCCATTCCGCTTCCAATGGTGTCCTATTGGCCGCTTAGCCCAACTTCCATCTGTATTTGA
- - - - - gcccatg
- - - - - - - - -ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtta