1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagccttcttgtgaacacggtcaaccgttattttgcttgagcattatgtgattttgtggtgactgctttcaaacccacaagtaatgtttgttgcttctcatgtttatctccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACA
species | Oryza sativa |
transcript | LOC_Os01g07376.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAG GAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATEST: gi|88827894|gb|CI778459.1|CI778459
genomic: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGgtcagccttc ... ccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCAT
EST: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAG GAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATEST: gi|88357530|gb|CI623584.1|CI623584
genomic: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGgtcagccttc ... ccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCAT
EST: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAG GAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATEST: gi|58593123|gb|CF991431.1|CF991431
genomic: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGgtcagccttc ... ccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCAT
EST: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAG GAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGGGGTGTGCATEST: gi|218497249|gb|FG946477.1|FG946477
genomic: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGgtcagccttc ... ccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCAT
EST: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAG GAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCAT
genomic: AGGGTAGTTTCTTGGTTTAGTCAACTACTATGGGGTCCTGTGTGGGAAAGgtcagccttc ... ccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCAT
gctttcaaacccacaagtaatgtttgttgcttctcatgtttatctccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACA
tttatctcccc CT-rich tract
taatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagccttcttgtgaacacggtcaaccgttattttgcttgagcattatgtgattttgtggtgactgctttcaaacccacaagtaatgtttgttgcttctcatgtttatctccccggacagGAACGCAGTGATGAAGAAGACAAGATTGACTTCAAAGGTGGCAATGTGCATGTGATTAGTAACAAAGAGAATTGGGACCACAAAATTGCAGAGGCAAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA