1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gttgcttatgtttatctaatcaaatggttggcaaagttatcaagagaaacaagccattatctaatttgagatgtgttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAGCCAGTGAAGAAACCTGGCCAGCAATTAGGAAGCTTCTTCAACGCGAGA
species | Oryza sativa |
transcript | LOC_Os01g39310.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAG GGACAACTTACCAAGGNACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAEST: gi|29641074|gb|CB646081.1|CB646081
genomic: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGgttgcttatg ... gttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
EST: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAG GGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAEST: gi|218488553|gb|FG950540.1|FG950540
genomic: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGgttgcttatg ... gttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
EST: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAG GGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAEST: gi|58665350|gb|CK054036.1|CK054036
genomic: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGgttgcttatg ... gttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
EST: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAG GGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAEST: gi|157650537|gb|EX450171.1|EX450171
genomic: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGgttgcttatg ... gttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
EST: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAG GGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAEST: gi|58661464|gb|CK050144.1|CK050144
genomic: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGgttgcttatg ... gttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
EST: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTGGGTTCCAAATACGAG GGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAEST: gi|5003388|gb|AU068537.1|AU068537
genomic: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGgttgcttatg ... gttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
EST: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAG GGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
genomic: TGGCATCAGTTCGTGCCAAAAAACTATCTGAACTTTGTTCCAAATACGAGgttgcttatg ... gttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCA
ggcaaagttatcaagagaaacaagccattatctaatttgagatgtgttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAGCCAGTGAAGAAACCTGGCCAGCAATTAGGAAGCTTCTTCAACGCGAGA
atctaat putative branch site (score: 3)
ttatttt putative PPT
attatctaatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcttatgtttatctaatcaaatggttggcaaagttatcaagagaaacaagccattatctaatttgagatgtgttattttagGGACAACTTACCAAGGCACTGGCAGAACCAGTTGAAGCTCTTCTAGATTCAGCCAGTGAAGAAACCTGGCCAGCAATTAGGAAGCTTCTTCAACGCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA