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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtatgaccgcagcttctagaatggggatatacctagttattatgtcaattaataatgtggtatctctgtgtagtggttcttatttaagttctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGTAAATATCTTGATTATCTCGCGAGCTGTATGTGTGAATTGTGAAAACCT

Basic information

species Oryza sativa
transcript LOC_Os01g71624.5
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86821340|gb|CI266804.1|CI266804
EST:     CGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG                         GAGTCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
genomic: CGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: gi|86855522|gb|CI267051.1|CI267051
EST:     AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG                         GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: gi|87025360|gb|CI267726.1|CI267726
EST:     AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG                         GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: gi|87025184|gb|CI265749.1|CI265749
EST:     AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG                         GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
EST: gi|86855686|gb|CI269013.1|CI269013
EST:     AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAG                         GAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG
genomic: AAGAATCGATAATCAGGCTGCTATATTGGATTTATTTACGTTGGAGCAAGgcaagttatt ... tctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaattaataatgtggtatctctgtgtagtggttcttatttaagttctcgcgcagGAGGCAAACTTACGCCGAGCAGGGCGATTGTAATATTTACCGAGGCGCAGGTAAATATCTTGATTATCTCGCGAGCTGTATGTGTGAATTGTGAAAACCT
  aattaat  putative branch site (score: 3)
                                            ttctcgc  putative PPT
                                ttcttatttaagtt  TA-rich tract