1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcaatgtgccggagtattatgttttagctctctgactgactataatttgtagaatgaattgtgaatctagcactgagagtatcttgtttcttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATG
species | Oryza sativa |
transcript | LOC_Os01g57890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAEST: gi|88726288|gb|CI749943.1|CI749943
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAEST: gi|88721836|gb|CI743348.1|CI743348
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAEST: gi|88720267|gb|CI743566.1|CI743566
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAEST: gi|88729603|gb|CI751406.1|CI751406
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAGTGAGTATTCCAGCAAGAGAATTATTTGCAGCAEST: gi|88730931|gb|CI754544.1|CI754544
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAEST: gi|88728831|gb|CI752341.1|CI752341
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAEST: gi|88719773|gb|CI743283.1|CI743283
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
EST: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCG AATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
genomic: TCGTGGCCTTGATGAACGGTTTTGCTGGTGACGGGACGGCAACACTACCGgtattttctc ... ttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCA
tttgtagaatgaattgtgaatctagcactgagagtatcttgtttcttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATG
tatcttgtttctttt CT-rich tract
ttgtttcttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatgtgccggagtattatgttttagctctctgactgactataatttgtagaatgaattgtgaatctagcactgagagtatcttgtttcttttaatcagAATGATGGGGAGCAGAGAATGAGTATTCCAGCAAGAGAATTATTTGCAGCAATTGAGGCCGACTCAGGCTTGTTGCCTGTGAACAGTAGCAACACTAATG
- - -gtgccgg
- - - - - - - - ttatgtt
- - - - - - - - - - - - - - - -ctgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcactga