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gtatttttataatttattttgtgttaccttgaagcttcttggtaatataacttccaacaccatataccttattgttgttgaatcaataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAATGTAGTTGATATTTCTATG
species | Glycine max |
transcript | GLYMA20G37730.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAG GCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGEST: gi|208201934|gb|GD997025.1|GD997025
genomic: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAGgtatttttat ... aataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATG
EST: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAG GCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAAEST: gi|12773933|gb|BG238860.1|BG238860
genomic: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAGgtatttttat ... aataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAA
EST: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAG GCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAAEST: gi|254344505|gb|GR851202.1|GR851202
genomic: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAGgtatttttat ... aataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAA
EST: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAG GCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAAEST: gi|298168984|gb|HO020288.1|HO020288
genomic: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAGgtatttttat ... aataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAA
EST: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAG GCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAAEST: gi|207696263|gb|GD677772.1|GD677772
genomic: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAGgtatttttat ... aataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAA
EST: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAAT-CTTT-ATTGGAAG GCCATATTCTGAAAGTTACAATCCAACCA
genomic: GGGCCTAGGAAGGCTGGAAAATCTGCATTATTGAATTCTTTTATTGGAAGgtatttttat ... aataatgcagGCCATATTCTGAAAGTTACAATCCAACCA
tggtaatataacttccaacaccatataccttattgttgttgaatcaataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAATGTAGTTGATATTTCTATG
atataac putative branch site (score: 3)
aatcaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttttataatttattttgtgttaccttgaagcttcttggtaatataacttccaacaccatataccttattgttgttgaatcaataatgcagGCCATATTCTGAAAGTTACAATCCAACCACTGAAGATCGTTATGCTGTAAATGTAGTTGATATTTCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG