1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgaacggttttatggtttgcttaggttttattttgaattgtgttgtgaggccctaactgtttacccacacgtctatctttaatttataaatatttatttgtatgattttcttagatgtcttttttgtttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG
species | Glycine max |
transcript | GLYMA19G41690.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCEST: gi|209699182|gb|BW664359.1|BW664359
genomic: TTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
EST: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTCCCAG ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCEST: gi|10255939|gb|BE823705.1|BE823705
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
EST: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGTTTCTTCTGCCAG ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCEST: gi|21600775|gb|BQ611106.1|BQ611106
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
EST: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCEST: gi|58024257|gb|CX710998.1|CX710998
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
EST: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCEST: gi|209720793|gb|BW657767.1|BW657767
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
EST: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCEST: gi|15337327|gb|BI497983.1|BI497983
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
EST: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAG ACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
genomic: TATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGgtttgaacgg ... tttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGC
atttataaatatttatttgtatgattttcttagatgtcttttttgtttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG
ctttaat putative branch site (score: 4)
tgtcttttttgttt putative PPT
taaatatttatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaacggttttatggtttgcttaggttttattttgaattgtgttgtgaggccctaactgtttacccacacgtctatctttaatttataaatatttatttgtatgattttcttagatgtcttttttgtttgtaccagACATGGCGACCTTTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA