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gtatcttacgactaaaatatgttactcattgctatagtttgattataaaaatgtgtctaaaacatagtataatccatgtctcatgttatttcagtaaacattaaagttctccactattatgtgaggttatccacaccataaccatcattacgttgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAACTCTCATGCAAGTGACAC
species | Glycine max |
transcript | GLYMA13G26280.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCA-TGCAATTTGATGCAGAATATGCTAG-TGGCTGGAAGAGCAGAATCEST: gi|192329072|gb|FK021425.1|FK021425
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCEST: gi|19346060|gb|BM890940.1|BM890940
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCEST: gi|13252262|gb|BG363165.1|BG363165
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCEST: gi|193368153|gb|FK329969.1|FK329969
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCEST: gi|193328847|gb|FK293551.1|FK293551
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCEST: gi|9565078|gb|BE474587.1|BE474587
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCEST: gi|193422285|gb|FK391494.1|FK391494
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATC
EST: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATG GGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTTGGAAGAGCAGAATEST: gi|192312701|gb|FK004389.1|FK004389
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCT-GGAAGAGCAGAAT
EST: -ATTT-CATATCAAGCTCGGGTGATCA-GCACATACATTGAGTG-AA-TG GG-CA-TGCA-TTTGATGCAG
genomic: GATTTTCATATCAAGCTCGGGTGATCAAGCACATACATTGAGTGGAAATGgtatcttacg ... tgttttccagGGGCAATGCAATTTGATGCAG
ctccactattatgtgaggttatccacaccataaccatcattacgttgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAACTCTCATGCAAGTGACAC
ccataac putative branch site (score: 3)
ttgttttcc putative PPT
tattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcttacgactaaaatatgttactcattgctatagtttgattataaaaatgtgtctaaaacatagtataatccatgtctcatgttatttcagtaaacattaaagttctccactattatgtgaggttatccacaccataaccatcattacgttgttttccagGGGCAATGCAATTTGATGCAGAATATGCTAGGTGGCTGGAAGAGCAGAATCGACAAATTAATGAGCTAAGAGCAGCTGTAAACTCTCATGCAAGTGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG