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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagctagtgtatatatgctgtctatgtaatgtatcattgttgtcttatggtacttggttttgtagaaccttgtcgggttcaagtgtttttatgtgtgctcattcatagattttactgatgaatatacttgtatctaatttcctgttcttttctccccttttctcatgcatgtgtatgtagTGTTTGCTACAGTCAGGCTCAGTGACCACACAACCAGGGAAGATGACACTAGACATTCTGGAACTAAATCGCTTGAGGCGTTCTCTTCATATTGGTTCAC

Basic information

species Glycine max
transcript GLYMA07G34030.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193622282|gb|FK568160.1|FK568160
EST:     ACATACTGGATCTGAAAGATATGCTTCAAAGAGAAAGAACTGATTATCAT                         TGTTTGCTACAGTCAGGCTCAGTGACCACACAACCAGGGAAGATGACACTA
genomic: ACATACTGGATCTGAAAGATATGCTTCAAAGAGAAAGAACTGATTATCATgtaagcaagc ... gtgtatgtagTGTTTGCTACAGTCAGGCTCAGTGACCACACAACCAGGGAAGATGACACTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgtatctaatttcctgttcttttctccccttttctcatgcatgtgtatgtagTGTTTGCTACAGTCAGGCTCAGTGACCACACAACCAGGGAAGATGACACTAGACATTCTGGAACTAAATCGCTTGAGGCGTTCTCTTCATATTGGTTCAC
      atctaat  putative branch site (score: 3)
            tttcctgttcttttct  CT-rich tract
     tatctaattt  TA-rich tract