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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcatgctgttcctctgccactttttattttttattttataaactatagaaattaaacatgttggctaattaggggttaactccatttttgaatgttatgcagGCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCA

Basic information

species Glycine max
transcript GLYMA0041S00200.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0041S00200.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0001g08610.t01 (Vitis vinifera), 3'ss of exon 7
-------gttcatgctgttcctctgccactttttattttttattttataaactatagaaattaaacatgttggctaattaggggttaactccatttttgaatgtta--tgcagGCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCA
         | ||     | || |    ||  |        ||| |  || |  || |  |    | |      |  ||    |||   |   |||||   | |||  | |||||| || |||||||| || ||||| ||  |||| || || ||||| ||||| |||||||||||||| ||||||||||
gttttattcttatataacttcttt-tttctcctagcacgccattgttcaagcattaaagttggccccttaaaattctttttttgtttgtttttttttttttttttaaatacagGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGGAGGGTTGCTGGAAACAAGGACCTTTATCTCGGGACATTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattaaacatgttggctaattaggggttaactccatttttgaatgttatgcagGCACCACCAACATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCA
                          ggttaac  putative branch site (score: 3)
                                    atttttgaatgttat  TA-rich tract