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gttagttaaacatgtgtttactaatcatagaaaccataatgatatacttcatatctgaatggttgaattattctttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTGACAGTAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTA
species | Glycine max |
transcript | GLYMA19G41690.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAA GCTGGTATAATAGCATCTCTGGAATGACTTGGTGEST: gi|7327245|gb|AW620967.1|AW620967
genomic: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAAgttagttaaa ... ttctgtgtagGCTGGTATAATAGCATCTCTGGA-TGACTTGGTG
EST: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAA GCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTEST: gi|10255939|gb|BE823705.1|BE823705
genomic: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAAgttagttaaa ... ttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCT
EST: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAA GCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTEST: gi|21600775|gb|BQ611106.1|BQ611106
genomic: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAAgttagttaaa ... ttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCT
EST: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAA GCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTEST: gi|58024257|gb|CX710998.1|CX710998
genomic: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAAgttagttaaa ... ttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCT
EST: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAA GCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTEST: gi|209720793|gb|BW657767.1|BW657767
genomic: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAAgttagttaaa ... ttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCT
EST: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAA GCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCT
genomic: ATGAGAAATGTGGTACCTACCGTGATGGGAAGGGGCAGCTTACTTCTAAAgttagttaaa ... ttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCT
gaaaccataatgatatacttcatatctgaatggttgaattattctttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTGACAGTAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTA
ttattctttct CT-rich tract
ataatgatatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttaaacatgtgtttactaatcatagaaaccataatgatatacttcatatctgaatggttgaattattctttctgtgtagGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTGACAGTAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA