1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgcaagtgcaacaccctctattatgctccatcctttatataatatattttccttggtatttattagcttgacagcaattagttgtcaatcagcataatattcatgtcatataaacgtttttctgatatcatcatgtgaaatatattcatgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTTGCTCGTGAAGAAAGAAGAGAGGGAGCCCCTCTTTCTCTGCTTTATTTA
species | Glycine max |
transcript | GLYMA19G36130.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA GACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTEST: gi|120495842|gb|EH224009.1|EH224009
genomic: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGAgtatgtgcaa ... atgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGT
EST: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA GACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTEST: gi|117557702|gb|EG702087.1|EG702087
genomic: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGAgtatgtgcaa ... atgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGT
EST: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA GACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTEST: gi|120495642|gb|EH223809.1|EH223809
genomic: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGAgtatgtgcaa ... atgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGT
EST: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA GACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTEST: gi|6915018|gb|AW396548.1|AW396548
genomic: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGAgtatgtgcaa ... atgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGT
EST: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA GACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTEST: gi|31473394|gb|CD415407.1|CD415407
genomic: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGAgtatgtgcaa ... atgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGT
EST: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA GACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGT
genomic: GAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGAgtatgtgcaa ... atgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGT
atgtcatataaacgtttttctgatatcatcatgtgaaatatattcatgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTTGCTCGTGAAGAAAGAAGAGAGGGAGCCCCTCTTTCTCTGCTTTATTTA
ttctgat putative branch site (score: 3)
atataaacgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgcaagtgcaacaccctctattatgctccatcctttatataatatattttccttggtatttattagcttgacagcaattagttgtcaatcagcataatattcatgtcatataaacgtttttctgatatcatcatgtgaaatatattcatgtgagcagGACAAGGAGGCAGGGGATGACCCAGAAATTGAAGATATCTTGAAAGCATGTTGCTCGTGAAGAAAGAAGAGAGGGAGCCCCTCTTTCTCTGCTTTATTTA
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