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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaacctgtattttatttttgttagtttaaatccacttcctagtgtaactgtcttaccacagGGGAGTGAGATACCATGAACCCGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTTCGGCATGCTACAGGACAATTATATGCCATTTCACAAGAT

Basic information

species Glycine max
transcript GLYMA17G01660.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01660.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0116g01710.t01 (Vitis vinifera), 3'ss of exon 8
-----------gtaagaaaacctg--tattttatttttg-----ttagtttaaatccacttcctagtgtaactgtcttaccacagGGGAGTGAGATACCATGAACCCGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTTCGGCATGCTACAGGACAATTATATGCCATTTCACAAGAT
           || |||          || | |   |||     | | ||  | |   ||||  | | | | | |  |   |||||||||| | |||||||||||| || || ||||| ||||| |||| |||||||||||| || || ||||||||||||||| ||||||| |||||| || ||
gtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacagGGGAGTCAAATACCATGAACCAGAGTATTGGAAATTTGGCGAGGAGGGAAACAAGTATTTCCGTCATGCTACAGGACAACTATATGCTATTTCAAAAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattttatttttgttagtttaaatccacttcctagtgtaactgtcttaccacagGGGAGTGAGATACCATGAACCCGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTTCGGCATGCTACAGGACAATTATATGCCATTTCACAAGAT
                                           gtcttac  putative branch site (score: 3)
                                         ctgtctt  CT-rich tract
     ttatttttgttagttt  TA-rich tract