1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tagaagccttcaactgaaatcttatatgaaacttgcttcatttggaatatggtgggaactcctacattttgtttaatattttttgtgttcatgtatccagTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAG
species | Glycine max |
transcript | GLYMA17G00910.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGGGAGGGCTTCCAAAATTGTTGATAAAGATGAAGGCCTGGGGAAG TTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGGEST: gi|6963645|gb|AW432338.1|AW432338
genomic: GAAGAGGGAGGGCTTCCAAAATTGTTGATAAAGATGAAGGCCTGGGGAAGgtaaatagat ... atgtatccagTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGG
EST: GAAGAGGGAGGGCTTCCAAAATTGTTGATAAAGATGAAGGCCTGGGGAAG TTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGG
genomic: GAAGAGGGAGGGCTTCCAAAATTGTTGATAAAGATGAAGGCCTGGGGAAGgtaaatagat ... atgtatccagTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGG
aatatggtgggaactcctacattttgtttaatattttttgtgttcatgtatccagTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAG
gtttaat putative branch site (score: 4)
tacattttgtttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaagccttcaactgaaatcttatatgaaacttgcttcatttggaatatggtgggaactcctacattttgtttaatattttttgtgttcatgtatccagTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTCGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - agccttc
- - - - - - - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - -tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgttc