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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttttttagttgttttttttttcatctcagttgattaatttataaactgtgtacactttctgactcttaacattcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGG

Basic information

species Glycine max
transcript GLYMA08G20090.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254322663|gb|GR838077.1|GR838077
EST:     AAAATTTCAGGAAAACCATCAAT                         CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
genomic: AAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
EST: gi|9986553|gb|BE660661.1|BE660661
EST:     ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAAT                         CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
genomic: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
EST: gi|254336045|gb|GR841370.1|GR841370
EST:     ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAAT                         CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
genomic: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
EST: gi|254326913|gb|GR836522.1|GR836522
EST:     ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAAT                         CGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA
genomic: ACCCATTTGAAGACCAAGAGGATCCCAAAAATTTCAGGAAAACCATCAATgtactttttt ... tcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgattaatttataaactgtgtacactttctgactcttaacattcttatacagCGAATTATGGCTGTTCAATACAAGATTCCAGACTACGTTCACATATCTCAAGACTGTAGACATCTTCTATCTCGCATTTTTGTGGCAAATCCAGCTAGG
                                    tcttaac  putative branch site (score: 2)
                                          cattctt  CT-rich tract
     attaatttataaactg  TA-rich tract