1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gatatcttctaagtcattgacacttgacaggatcattttttcccttctgtgcatggctgaatttctcttaacttttccttcatatttgacatggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA
species | Glycine max |
transcript | GLYMA19G36130.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTG GAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATAEST: gi|120495842|gb|EH224009.1|EH224009
genomic: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTGgtatgtaaat ... atggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATA
EST: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTG GAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATAEST: gi|9902843|gb|BE611811.1|BE611811
genomic: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTGgtatgtaaat ... atggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATA
EST: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGNTAGCAGAGGAGGCTG GAAACAAGGAGGAATTATAGTTGCAGGCCCGGGGTAAAA-CAACATCTCATEST: gi|117557702|gb|EG702087.1|EG702087
genomic: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTGgtatgtaaat ... atggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGG-TAAAAACAACATCTCAT
EST: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTG GAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATAEST: gi|120495642|gb|EH223809.1|EH223809
genomic: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTGgtatgtaaat ... atggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATA
EST: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTG GAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATAEST: gi|31473394|gb|CD415407.1|CD415407
genomic: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTGgtatgtaaat ... atggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATA
EST: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTG GAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATA
genomic: CAAGATTGGAAGCTTTCATTTGAAAAGGATACCGTTAGCAGAGGAGGCTGgtatgtaaat ... atggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATA
tctgtgcatggctgaatttctcttaacttttccttcatatttgacatggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA
ttaactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatcttctaagtcattgacacttgacaggatcattttttcccttctgtgcatggctgaatttctcttaacttttccttcatatttgacatggtggcagGAAACAAGGAGGAATTATAGTTGCAGGCCCGGGTAAAAACAACATCTCATACCTTCACAGA
- - - - - - - - -tgacact
- - - - - - - - - - - - - - - - - - - - tcccttc
- - - - - - - - - - - - - - - - - - - - - - - - - gcatggc