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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taagccgattttgtattatgtgatttgctacaagtttctattctagttccatagttaaatactcaatgttgtggtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACCAACAACAAGGCAAGTTATTCTAAATCACACCATCTAACCAGTCTGAGTG

Basic information

species Glycine max
transcript GLYMA18G11030.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341419|gb|GR855147.1|GR855147
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|22521911|gb|BU080722.1|BU080722
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|31458968|gb|CD400996.1|CD400996
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|209718566|gb|BW662684.1|BW662684
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|22521754|gb|BU080565.1|BU080565
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
EST: gi|16347333|gb|BI972928.1|BI972928
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACCGATCATG                         ATGGTAAAATCAACTATGAAGAA
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAA
EST: gi|58021875|gb|CX708616.1|CX708616
EST:     AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATG                         ATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC
genomic: AATCATATCTGAAGTTGATACAATTATATCTGAAGTGGACACAGATCATGtaagccgatt ... gtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacaagtttctattctagttccatagttaaatactcaatgttgtggtttcacaggATGGTAGAATCAACTATGAAGAATTCTCTGCGATGATGAAGAGTGGAAACCAACAACAAGGCAAGTTATTCTAAATCACACCATCTAACCAGTCTGAGTG
                      atagttaaata  TA-rich tract