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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgtgagaactaaagctgtagagttagatgatggtttttatggtaatattcatcaagcagaataccttctttcttaatcacattttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG

Basic information

species Glycine max
transcript GLYMA17G01820.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 3'ss of exon 8
gatgtgagaactaaagctgtagagttagatgatggtttttatggtaatattcatcaagcagaataccttctttcttaatc---acattttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG
 | | |     | |    |  || |   ||  | | | ||   |   |  | | ||  |     |  |   | |   ||    |||  ||        |||||| | || | ||||||||||||||||||||||| ||| |||| |||   ||||| || ||| ||||||| || ||||||
-aagaggattgtgacatggctgaatcttat--taggtcttgctgctgtcctaaacatacgtggaatttctatacacgattttaacaaattttcaaaactgcagGTTGTTTTATCTGCATTTGATTCAGATGCATCACTTGATGTCTTGAGCCATCCGATCTTGAACTTGATCTACTACATG

upper sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv00s2038g00010.t01 (Vitis vinifera), 3'ss of exon 4
gatgtgagaactaaagctgtagagttagatgatggtttttatggtaatattcatcaagcagaataccttctttcttaatc---acattttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG
 | | |     | |    |  || |   ||  | | | ||   ||  |  | | ||  |     |  |   | |   ||    |||  ||        |||||| | || | ||||||||||||||||||||||| ||| |||| |||   ||||| || ||| ||||||| || ||||||
-aagaggattgtgacatggctgaatcttat--taggtcttgctgttgtcctaaacatacgtggaatttctatacacgattttaacaaattttcaaaactgcagGTTGTTTTATCTGCATTTGATTCAGATGCATCACTTGATGTCTTGAGCCATCCGATCTTGAACTTGATCTACTACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337606|gb|BI498262.1|BI498262
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|22928978|gb|BU546117.1|BU546117
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCANNNGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|207689733|gb|GD672840.1|GD672840
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|26058229|gb|CA801143.1|CA801143
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|58014541|gb|CX701283.1|CX701283
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|7925940|gb|AW831966.1|AW831966
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|17518941|gb|BM187983.1|BM187983
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
EST: gi|14999917|gb|BI320731.1|BI320731
EST:     GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT
genomic: GATCGGTCACAACCATCTGTTTCACCTGTTTTCTGATAAGATGCATTATGgtaacttctg ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattcatcaagcagaataccttctttcttaatcacattttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTTAATGTTTTGGATCATCCTATTTTGGACTTGATTTATTACATG
                         tttcttaat  TA-rich tract