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gtaagtatatctttgaggttccttgttatcaatttaaggttgggacctttaattttcataaaaccaatattgtggaacctgactatgctcttttttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA
species | Glycine max |
transcript | GLYMA10G01820.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAAEST: gi|208240285|gb|GE040911.1|GE040911
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAA
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|207826896|gb|GD797445.1|GD797445
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: TGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193622826|gb|FK571096.1|FK571096
genomic: TGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|16347802|gb|BI973397.1|BI973397
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTTGCAAA-GTCTTGCTCCT ACTTACGAGAAAGTTEST: gi|308098808|gb|HO760649.1|HO760649
genomic: GTGTGGACATT-GCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193581994|gb|FK536905.1|FK536905
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|213613771|gb|DB961268.1|DB961268
genomic: GTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|207775299|gb|GD750300.1|GD750300
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAAGATGTAGTAATEST: gi|193404855|gb|FK373338.1|FK373338
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAA-GATGTAGTAAT
EST: TGGACATTGC-AAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208278564|gb|GE076243.1|GE076243
genomic: TGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGEST: gi|207757388|gb|GD727168.1|GD727168
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAG
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGEST: gi|209701913|gb|BW664567.1|BW664567
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAG
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193397053|gb|FK362009.1|FK362009
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: AAAGTNTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208257921|gb|GE050952.1|GE050952
genomic: AAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|207839904|gb|GD810097.1|GD810097
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193411626|gb|FK381617.1|FK381617
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTTGTCTAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208106673|gb|GD905622.1|GD905622
genomic: GTGTGGACATT-G-C-AAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTACTTGCTCCT ACTTACGAGAAAGTTGCCACAGCEST: gi|207847941|gb|GD819610.1|GD819610
genomic: GTGTGGACATTGCAAAAGT-CTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGC
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAAATTGGAAGGAAAGATGTAGTAEST: gi|22540736|gb|BU090579.1|BU090579
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAA-TTGGA-GGAA-GATGTAGTA
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|151396040|gb|EV265917.1|EV265917
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208117268|gb|GD918182.1|GD918182
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAGTTGGAGGAAGATGTAGTAATTEST: gi|9440203|gb|BE440712.1|BE440712
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|213587217|gb|DB965921.1|DB965921
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|151397387|gb|EV267260.1|EV267260
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|208143785|gb|GD942886.1|GD942886
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGEST: gi|207783866|gb|GD756846.1|GD756846
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAG
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCEST: gi|6746823|gb|AW317279.1|AW317279
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGC
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|151406560|gb|EV276375.1|EV276375
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193415139|gb|FK378405.1|FK378405
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGAEST: gi|209711953|gb|BW679032.1|BW679032
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGA
EST: GTGTGGACATTGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTEST: gi|193577177|gb|FK535700.1|FK535700
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
EST: GTGTGGACA-TGCAAAAGTCTTGCTCCT ACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
genomic: GTGTGGACATTGCAAAAGTCTTGCTCCTgtaagtatat ... ttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATT
taattttcataaaaccaatattgtggaacctgactatgctcttttttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA
acctgac putative branch site (score: 3)
ctatgctcttttttcc CT-rich tract
ataaaaccaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatatctttgaggttccttgttatcaatttaaggttgggacctttaattttcataaaaccaatattgtggaacctgactatgctcttttttccctccagACTTACGAGAAAGTTGCCACAGCATTTAAATTGGAGGAAGATGTAGTAATTGCAAATCTGGATGCTGATAAATATAGGGATCTGGCTGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT