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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatctttagcatttgttaactgaggatcctatattgcaagtacaagtctttagttatgaatgtgaattttcccctgcaaagactttcacacgcttgataacaataataatgcttaaattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATATTGTTGGGAATAGACTCCCCAAATTCACTAGTGAAGAAGTTAAAATCGTG

Basic information

species Glycine max
transcript GLYMA09G30910.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193655463|gb|FK601821.1|FK601821
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAAACCATTCAAAATA
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAA-CCATTCAAAATA
EST: gi|193352813|gb|FK317321.1|FK317321
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|207795313|gb|GD765442.1|GD765442
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAA-TAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193336279|gb|FK297661.1|FK297661
EST:     AAGGTTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|208043262|gb|GD837880.1|GD837880
EST:     AGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193319663|gb|FK283504.1|FK283504
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTTGTTTATGGAGAGTATCCAAAAAACCATTCAAAAA
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTT-GTTTATGGAGAGTATCCAAAAA-CCATTCAAAA-
EST: gi|23727814|gb|BU761942.1|BU761942
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193358539|gb|FK326621.1|FK326621
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATACCAAAAACCATTCAAA-TA
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTAT-CCAAAAACCATTCAAAATA
EST: gi|193530291|gb|FK483690.1|FK483690
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193319870|gb|FK287575.1|FK287575
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATACCAAAAACCATTACAAAAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTAT-CCAAAAACCATT-CAAAAT
EST: gi|51335534|gb|CO979400.1|CO979400
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACNTNCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|208097434|gb|GD896347.1|GD896347
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTC-AAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|207810230|gb|GD782404.1|GD782404
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTT
EST: gi|193394087|gb|FK357700.1|FK357700
EST:     CTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: CTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193412417|gb|FK379440.1|FK379440
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAAATA
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTC-AAAATA
EST: gi|58018438|gb|CX705180.1|CX705180
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193364851|gb|FK330560.1|FK330560
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193436866|gb|FK402495.1|FK402495
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAA-CCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193365984|gb|FK333317.1|FK333317
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAAACCATTCAAAAAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAA-CCATTCAAAA-T
EST: gi|193430304|gb|FK393278.1|FK393278
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|14012034|gb|BG726965.1|BG726965
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
EST: gi|193398433|gb|FK362955.1|FK362955
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAAACCATTCAAAATA
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAA-CCATTCAAAATA
EST: gi|193382822|gb|FK346705.1|FK346705
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTACAAAATA
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATT-CAAAATA
EST: gi|207836084|gb|GD807411.1|GD807411
EST:     AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATG                         GTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT
genomic: AAGGCTGACAATTTTGCAGCTCAAAGAGCCAGAGACTTTCATATTGGATGgtaaaaatct ... aattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctgcaaagactttcacacgcttgataacaataataatgcttaaattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATATTGTTGGGAATAGACTCCCCAAATTCACTAGTGAAGAAGTTAAAATCGTG
                        tgataac  putative branch site (score: 2)
                          ataacaataataatgc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaaatctttagcatttgttaactgaggatcctatattgcaagtacaagtctttagttatgaatgtgaattttcccctgcaaagactttcacacgcttgataacaataataatgcttaaattcaccagGTTCATTCATCCCCTTGTTTATGGAGAGTATCCAAAAACCATTCAAAATATTGTTGGGAATAGACTCCCCAAATTCACTAGTGAAGAAGTTAAAATCGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT