1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgattttacttaagcacaaaaactgtgagtatgtacacaaagaaaaagttttgaagtcataccaagttaacaagcatttatatatgttgaaaatttccagGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTAGGTGACACTGATACGATAACCACTGCATTGCAGTCATGCTGTGAT
species | Glycine max |
transcript | GLYMA09G29070.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGTTACTGAAGTTGTTGATCCGAATTCCTACAAAGAACCTATAGCTCAG GTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTAEST: gi|17519675|gb|BM188717.1|BM188717
genomic: GGGTTACTGAAGTTGTTGATCCGAATTCCTACAAAGAACCTATAGCTCAGgtgggttgat ... aaatttccagGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTA
EST: GGGTTACTGAAGTTGTTGATCCGAATTCCTACAAAGAACCTATAGCTCAG GTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTA
genomic: GGGTTACTGAAGTTGTTGATCCGAATTCCTACAAAGAACCTATAGCTCAGgtgggttgat ... aaatttccagGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTA
aagttttgaagtcataccaagttaacaagcatttatatatgttgaaaatttccagGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTAGGTGACACTGATACGATAACCACTGCATTGCAGTCATGCTGTGAT
agttaac putative branch site (score: 3)
tttcc putative PPT
atttatatatgttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattttacttaagcacaaaaactgtgagtatgtacacaaagaaaaagttttgaagtcataccaagttaacaagcatttatatatgttgaaaatttccagGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCGTTTGAATGTGTAGGTGACACTGATACGATAACCACTGCATTGCAGTCATGCTGTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - -gcacaaa
- - - - - - - - - - aactgtg
- - - - - - - - - - - - - - -tatgtac
- - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagcat