Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatctatatttactctttcactttgtattgcttgtgtttgtcaatcttctttctttatgtccaatgttgttcttttaaccattatgtgaatttgttacagATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTG

Basic information

species Glycine max
transcript GLYMA20G37170.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os07g10490.1 (Oryza sativa), 3'ss of exon 6
aatctatatttactctttcact-ttgtattgcttgtgtttgtcaatcttctttc-tttatgtccaatgttgttcttttaaccattatgtgaatttgttacagATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTG
  |  | || | | || | | | | |||   ||  | ||  | ||   ||     |  ||  |   | |       ||||     | ||| | || || ||| | || ||    || ||||| || || |||||||| || ||   ||| || ||||  ||||||||||| ||||||||||| ||||| || ||||||||||
--taaacatatgcactataaatatcgtagaactgttattaatgaaaaatcagaggtagatagcttctatctaaaggttaatttgcaagtgtacttttttcagGTAAGTTTCAGCGATTGGTTCTTGTCGAAAGGTGGTACTCGAGAGAGCATCACAAGGATGTGGGATCCTGTTGCCTATGCTCTTGGTTTCATTGACTGTG

upper sequence: GLYMA20G37170.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 6
-aatctatatttactctttcactttgtattgcttgtgtttgtcaatcttctttctttatgtccaatgttgttcttttaaccattatgtgaatttgttacagATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTG
  |  |||          |   | |  ||    |||| || ||    |     | ||||||  | ||||||  |  | |  ||    |   |||  ||||||| ||||| || || |||||  | ||||||||||| ||||||||||| ||    | |||||||||||| ||||| |||||||| ||||||||||||||||
atagttatcccagtctactttatgtacatgtgatgtggttatctggttatgaaccttatgta-attgttgtcttacttaaaatctcatttgttttatacagATAAGCTTCTCTGATTGGTTCCTGTCCAAAGGTGGGACACGCATGAGCATCCAGAGAATGTGGGATCCTGTTGCTTATGCCCTCGGGTTTATTGACTGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254340371|gb|GR858496.1|GR858496
EST:     CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGT                         ATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
genomic: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGTgtaagaggat ... tttgttacagATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
EST: gi|208163803|gb|GD961497.1|GD961497
EST:     CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGT                         ATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT
genomic: CTCTTGTTGATCCAGATGGTGCACTGAGGGACATAAGGAATTTGGATAGTgtaagaggat ... tttgttacagATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctttctttatgtccaatgttgttcttttaaccattatgtgaatttgttacagATTAGCTTTTCAGACTGGTTTTTATCCAAAGGTGGCACACGCATGAGTATTACAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTG
                           ttttaac  putative branch site (score: 2)
                        ttcttttaa  TA-rich tract