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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatgttcttcagtccttagacttctattatagcttatggttattgtagagtttcacctgtttgtgattgtaactatgtcaaggtctatccttataaagtttatactgtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATAGCCAATGTTGATGCCGACAAGTATAAAGATTTGGCTGAGAA

Basic information

species Glycine max
transcript GLYMA19G41690.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151396704|gb|EV266577.1|EV266577
EST:     GTGTGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
genomic: GTGTGGTCATTGCAAGGCCCTTGCCCCTgtaaggatgt ... gtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
EST: gi|7146459|gb|AW508381.1|AW508381
EST:     GTGTGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
genomic: GTGTGGTCATTGCAAGGCCCTTGCCCCTgtaaggatgt ... gtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
EST: gi|7327245|gb|AW620967.1|AW620967
EST:     GTGTGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
genomic: GTGTGGTCATTGCAAGGCCCTTGCCCCTgtaaggatgt ... gtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
EST: gi|58024257|gb|CX710998.1|CX710998
EST:     GTGTGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
genomic: GTGTGGTCATTGCAAGGCCCTTGCCCCTgtaaggatgt ... gtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
EST: gi|192330240|gb|FK019835.1|FK019835
EST:     GTGTGGTCATTGCAAG-CCCTTGCCCCT                         ATTTATGAAAAAGTTGCCGCAGCATTTAACCTGGATAAAGATGTAGTTATA
genomic: GTGTGGTCATTGCAAGGCCCTTGCCCCTgtaaggatgt ... gtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
EST: gi|209720793|gb|BW657767.1|BW657767
EST:     TGTGGTCATTGCAAGGCCCTTGCCCCT                         ATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
genomic: TGTGGTCATTGCAAGGCCCTTGCCCCTgtaaggatgt ... gtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA
EST: gi|151410365|gb|EV280180.1|EV280180
EST:     GTGTGGTCATTGCAAAGGCCCTTGTCCCT                         ATTTATGAAAAAGTTGCTGCAGCATTTAACCTAGATAAAGATGTAGTTATA
genomic: GTGTGGTCATTGCAA-GGCCCTTGCCCCTgtaaggatgt ... gtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgattgtaactatgtcaaggtctatccttataaagtttatactgtttcttcagATTTATGAAAAAGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATAGCCAATGTTGATGCCGACAAGTATAAAGATTTGGCTGAGAA
     ttgtaac  putative branch site (score: 2)
                                           ctgtttcttc  putative PPT
                             ttataaagtttatact  TA-rich tract