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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agctcccaattcatagaaaataggatgcttcccatgtcttgcagtgattttcgtgtggttcaaaataaattgttggtttttatcactatttggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTTCCGAGGTTCTCTTCCCATATGCCCGTGATAATGTTGGGAGGCATCTAT

Basic information

species Glycine max
transcript GLYMA13G35120.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35120.3 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os11g29370.1 (Oryza sativa), 3'ss of exon 6
agctcccaattcatagaaaataggatgcttcccatgtcttgc--agtgat---tttcgtgtggttc---aaaataaattgttggtttttatcactatttggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTTCCGAGGTTCTCTTCCCATATGCCCGTGATAATGTTGGGAGGCATCTAT
   |     | | |    ||     || || | |  ||| |   | | ||   | |  | || |||   || | |||| | |    ||| |      ||   ||| ||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||  | || ||  | || || |||||||||||||||||  | | ||||||  
---tttgtgtactttcttaactttgtggttgctacatctggtcaactcatccatataatatgtttctggaatacaaatagctaacctttgtg-----ttctcttgcagCATTGTGTTGTTCTTGACATTGAGGGAACAACTACTCCAATATCATTTGTGACTGATGTGATGTTTCCCTATGCCCGTGATAATGTGCGAAAGCATCTGA

upper sequence: GLYMA13G35120.3 (Glycine max), 3'ss of exon 6
lower sequence: Vv19s0014g02480.t01 (Vitis vinifera), 3'ss of exon 6
-agctcccaattcatagaaaataggatgcttcc-catgtcttgcagtgattttcgtg--tggttcaaaataaattgttggtttttatcactatttggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTTCCGAGGTTCTCTTCCCATATGCCCGTGATAATGTTGGGAGGCATCTAT
 || |    || |   |   | || || |||   | | |  |||  | |||||  ||  || | | |   ||| || |     |||  | |  ||   ||  |||||||  ||||||||||||| ||||| ||||| ||||| |||||||||||  |||| |||||||| || | ||||||  |||||||  | |||||| |  
cagatat--atcctctggtcagagaattcttggacctttagtgcttttatttttatgcttgatcccattaaaactgctctccctta--atttgttatgtttcagCGTTGTATTGTTCTTGACATCGAAGGGACTACCACTCCTATATCATTTGTGACCGATGTTCTCTTTCCCTTTGCCCGCAATAATGTGAGTAGGCATTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7686641|gb|AW757298.1|AW757298
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|207692684|gb|GD676197.1|GD676197
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|10845021|gb|BF068210.1|BF068210
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTCCCA                         CGTTGCGTTGTTCTTGACAT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACAT
EST: gi|207783371|gb|GD755903.1|GD755903
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|13481676|gb|BG511019.1|BG511019
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|208064971|gb|GD862985.1|GD862985
EST:     ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
EST: gi|207827146|gb|GD797849.1|GD797849
EST:     ATGCGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCA                         CGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT
genomic: ATGTGTCAGTTAAAGCAAGGAAATCTAATGGTGACAGTGATCCATTGCCAgtgagttcac ... tggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttcgtgtggttcaaaataaattgttggtttttatcactatttggtttgtagCGTTGCGTTGTTCTTGACATTGAAGGAACTACTACTCCCATATCATTTGTTTCCGAGGTTCTCTTCCCATATGCCCGTGATAATGTTGGGAGGCATCTAT
                aaaataaattgttggt  TA-rich tract