1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agttgtgtgcttattcttacccaacaattaagagttttctggtatcatttcgctgtgctaaccaagaactaaatgaagcattttatttatgtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAGCATATGAGGGATTCCAAACATGGCAGAAAGTCCTAATTGGTACAACAG
species | Glycine max |
transcript | GLYMA12G08740.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAG ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAEST: gi|20813605|gb|BQ298083.1|BQ298083
genomic: GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
EST: GTTTTATCAAAACGTCAG ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAEST: gi|19452745|gb|BM954155.1|BM954155
genomic: GTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
EST: CAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAG ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAEST: gi|254333274|gb|GR850524.1|GR850524
genomic: CAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
EST: GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAG ATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
genomic: GCAACAGCAGCGACCAACCATTGCCATCAACTGTTTTATCAAAACGTCAGgtacaataac ... gtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCA
catttcgctgtgctaaccaagaactaaatgaagcattttatttatgtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAGCATATGAGGGATTCCAAACATGGCAGAAAGTCCTAATTGGTACAACAG
taaatgaagcatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgtgtgcttattcttacccaacaattaagagttttctggtatcatttcgctgtgctaaccaagaactaaatgaagcattttatttatgtttgtgtagATGTTGGATAGATTTGAACAGCACACTCTCAAGTGTTCATCATGTAAAGCAGCATATGAGGGATTCCAAACATGGCAGAAAGTCCTAATTGGTACAACAG
- -tgtgtgc
- - - - - - - - - - ccaacaa
- - - - - - - - - - - - - - - - - -tttctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaag