1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taattgtttgagactgacaggaataatttcttaaatttttaatggattggacatcttctgatctttacttttactaatatatcaagtgcatgtcatccagGAAAACAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTTGGGGAATCAACACCAGATGTTATAGTCAGTGAATTT
species | Glycine max |
transcript | GLYMA10G26510.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGACATGCCCTA GAAAACAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTTGGGGAAEST: gi|13479463|gb|BG508806.1|BG508806
genomic: AGACATGCCCTAgtgagtggtt ... tgtcatccagGAAAACAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTTGGGGAA
EST: GGTTTTAAGACATGCCCTA GAAAACAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTTGGGGAA
genomic: GGTTTTAAGACATGCCCTAgtgagtggtt ... tgtcatccagGAAAACAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTTGGGGAA
attggacatcttctgatctttacttttactaatatatcaagtgcatgtcatccagGAAAACAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTTGGGGAATCAACACCAGATGTTATAGTCAGTGAATTT
tactaat putative branch site (score: 1)
atctttacttttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattgtttgagactgacaggaataatttcttaaatttttaatggattggacatcttctgatctttacttttactaatatatcaagtgcatgtcatccagGAAAACAAAGATATTTTGGGAGATGGTTATGAAGGTGATGTTCTTGGGGAATCAACACCAGATGTTATAGTCAGTGAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- -ttgtttg
- - - - - - actgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagtgc