1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatttttgttatattattgtgtacattgtttgagaaagaaaatttgcaggtcttagtacactaaaatgtttttgtttgtatattgtatcttcttcaacagGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCTGAAATAGACTCCGTTGATGTGATCAGAGATAATGACAAACTTTT
species | Glycine max |
transcript | GLYMA08G20030.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGCTAATAAGGTTGCCTGATTCAATAGAGGAACTAAAAACTATTGCAG GTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAGEST: gi|22934113|gb|BU551252.1|BU551252
genomic: GAAGCTAATAAGGTTGCCTGATTCAATAGAGGAACTAAAAACTATTGCAGgtaacatttc ... tcttcaacagGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAG
EST: GAAGCTAATAAGGTTGCCTGATTCAATAGAGGAACTAAAAACTATTGCAG GTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAG
genomic: GAAGCTAATAAGGTTGCCTGATTCAATAGAGGAACTAAAAACTATTGCAGgtaacatttc ... tcttcaacagGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAG
gcaggtcttagtacactaaaatgtttttgtttgtatattgtatcttcttcaacagGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCTGAAATAGACTCCGTTGATGTGATCAGAGATAATGACAAACTTTT
cactaaa putative branch site (score: 2)
tatcttcttc putative PPT
taaaatgtttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttttgttatattattgtgtacattgtttgagaaagaaaatttgcaggtcttagtacactaaaatgtttttgtttgtatattgtatcttcttcaacagGTGAAAAATTTGGGTTTGATGCAAAAGATGCAATGGTGACAAATGAAGAAGGAGCTGAAATAGACTCCGTTGATGTGATCAGAGATAATGACAAACTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - -tgtgtac
- - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - tgcaggt