1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttccagttgctatctaccaagtgatattagctttatcaatgtacagttgtacattattgacttattttctctcaccaattatttttatggctgtgaacagACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCGTGCTTCTTCAACTCAGGAGCAATTACCAAGCCAAAAGGAAGCTAATGT
species | Glycine max |
transcript | GLYMA08G04180.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAG ACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCEST: gi|16996893|gb|BM086265.1|BM086265
genomic: TTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAGgtatgttgac ... ctgtgaacagACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTC
EST: TTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAG ACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTC
genomic: TTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCCGCTAAGACATTTACAGgtatgttgac ... ctgtgaacagACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTC
gttgtacattattgacttattttctctcaccaattatttttatggctgtgaacagACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCGTGCTTCTTCAACTCAGGAGCAATTACCAAGCCAAAAGGAAGCTAATGT
attattgacttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccagttgctatctaccaagtgatattagctttatcaatgtacagttgtacattattgacttattttctctcaccaattatttttatggctgtgaacagACCAGAAAAATTTAATGGATAAGCATGCAGAAGATCAGACAGAAACTTCTCGTGCTTCTTCAACTCAGGAGCAATTACCAAGCCAAAAGGAAGCTAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA