1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtagccactactcaagctgaattataaattaattaaattattgtgttggcagttctggctgtacttatgaactgtatctcttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCTTTACATGACATACAGTGGAGAGAACACTTTCGGCTCCCACTAGGGTCC
species | Glycine max |
transcript | GLYMA17G01650.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTG CCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCEST: gi|14991910|gb|BI317583.1|BI317583
genomic: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTGgtaagtagcc ... cttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTC
EST: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTG CCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCEST: gi|298173214|gb|HO020198.1|HO020198
genomic: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTGgtaagtagcc ... cttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTC
EST: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTG CCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCEST: gi|16276100|gb|BI941679.1|BI941679
genomic: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTGgtaagtagcc ... cttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTC
EST: TGCGGAGAAGGCTATTTTTGTTTGTATCTACAACACTCTACCTCCAACTG CCGCTGTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCEST: gi|151395677|gb|EV265554.1|EV265554
genomic: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTGgtaagtagcc ... cttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTC
EST: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTG CCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCEST: gi|16280358|gb|BI943920.1|BI943920
genomic: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTGgtaagtagcc ... cttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTC
EST: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTG CCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTC
genomic: TGCGGAGAAGGCTATTTTTGTTTTTATCTACAACACTCTACCTCCAACTGgtaagtagcc ... cttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTC
aaattattgtgttggcagttctggctgtacttatgaactgtatctcttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCTTTACATGACATACAGTGGAGAGAACACTTTCGGCTCCCACTAGGGTCC
tctcttgtt CT-rich tract
tacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagccactactcaagctgaattataaattaattaaattattgtgttggcagttctggctgtacttatgaactgtatctcttgttgcagCCGCTTTGATGTCTTCTATTTATGAGGAAAATAAGGACGATGATGGGTTTCTTTACATGACATACAGTGGAGAGAACACTTTCGGCTCCCACTAGGGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA