Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattttatgtcattgtgagtttttaacgagtgttctgttatggtctacacatgaaaattgactgataaatagttcaatttttcttttattatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCGTATAGGAACTTTTTACTTATTCCTGTCACTTCATTTATCTCTTTGTTC

Basic information

species Glycine max
transcript GLYMA17G01230.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208195424|gb|GD993943.1|GD993943
EST:     CGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: CGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|193539549|gb|FK497791.1|FK497791
EST:     CCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: CCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|208101134|gb|GD900551.1|GD900551
EST:     ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCG
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCG
EST: gi|208320363|gb|GE120432.1|GE120432
EST:     ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTG
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTG
EST: gi|193729793|gb|FK664739.1|FK664739
EST:     ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAA-CGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|193531934|gb|FK488800.1|FK488800
EST:     GACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: GACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|193723456|gb|FK660468.1|FK660468
EST:     CCGTTAGTGCTGTATCTAATTTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: CCGTTAGTGCTG-ATC-AA-TTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|193701372|gb|FK640035.1|FK640035
EST:     CACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTAATAGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGA
genomic: CACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGT-AT-GATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGA
EST: gi|308098720|gb|HO760461.1|HO760461
EST:     ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|193307006|gb|FK272946.1|FK272946
EST:     TTTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: -TTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|192314884|gb|FK010702.1|FK010702
EST:     ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|208170152|gb|GD968337.1|GD968337
EST:     AATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: AATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|208048249|gb|GD844786.1|GD844786
EST:     CTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: CTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|208247644|gb|GE050338.1|GE050338
EST:     ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: ATTTAAACAGTCTGACACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|193470146|gb|FK438803.1|FK438803
EST:     CCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: CCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
EST: gi|193592252|gb|FK546520.1|FK546520
EST:     CACCCGTTAGTGCTGATCAATTATTGCCATATAAG                         GGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC
genomic: CACCCGTTAGTGCTGATCAATTATTGCCATATAAGgttaactttt ... tatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctacacatgaaaattgactgataaatagttcaatttttcttttattatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCGTATAGGAACTTTTTACTTATTCCTGTCACTTCATTTATCTCTTTGTTC
               gactgat  putative branch site (score: 3)
                                 tttttcttttattat  putative PPT
                    ataaatagttcaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattttatgtcattgtgagtttttaacgagtgttctgttatggtctacacatgaaaattgactgataaatagttcaatttttcttttattatgatgcagGGTATGATCTGCACAAAACGCTGGTTATATGTTTCTGCTCGTTGCTAGATCGTATAGGAACTTTTTACTTATTCCTGTCACTTCATTTATCTCTTTGTTC

- - - - - - - - - - - - - - gagtgtt
- - - - - - - - - - - - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - - -ctacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgactg