Sequence
atgc intronic sequence ATGC exonic sequence...gttgttattcatatactcatgatatattttggcatgatgcaatttccagagagttatatgcacagtaaaacacttgaatgactgtttaaagttttaacagGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCTTGAGGCTGCTAGGGATGACTTTGTTTTCCAATTTGAGTCCCATGCTGAA
Basic information
species | Glycine max |
transcript | GLYMA17G01120.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G01120.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv00s0508g00020.t01 (Vitis vinifera), 3'ss of exon 5
---gttgttattcatatact--catgatatattttggcatgatgca-atttccagagagttatatgcacagtaaaacacttgaatgactgtttaaagttttaacagGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCTTGAGGCTGCTAGGGATGACTTTGTTTTCCAATTTGAGTCCCATGCTGAA
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ctcatagttatgcacatgcatgcatgcaatgtta-ggaaggatggatatgcattattcatttcatattgaatgatttatttgg-tgaatgttca----ttcaatagGCCAGACGAGGTTTACCATGTATCTGTGATGCCCTGTTATGATAAGAAGCTTGAGGCTGCAAGGGATGACTTTGTGTTTGAAGTGGATTCTCCAGGTGGA
upper sequence: GLYMA17G01120.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ34840 (Selaginella moellendorffii), 3'ss of exon 5
gttgttattcatatactcatgatatattttggcatgatgcaatttccagagagttatatgcacagtaaaacacttgaatgactgtttaaagttttaacagGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCTTGAGGCTGCTAGGGATGACTTTGTTTTCCAATTTGAGTCCCATGCTGAA
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-------------------------------gttcgtggt--tttcgagaccggagatctcgtaatcttacttttggttttcttttcgttgttcta---gACCGGAGGATGTATATCATGTTACAGTGATGCCTTGTTATGACAAGAAGCTGGAAGCTTCTCGGGACGACTTTATATTCGCTGTAGAGAACGGGGCCTCT
upper sequence: GLYMA17G01120.1 (Glycine max), 3'ss of exon 5
lower sequence: EFJ06869 (Selaginella moellendorffii), 3'ss of exon 5
gttgttattcatatactcatgatatattttggcatgatgcaatttccagagagttatatgcacagtaaaacacttgaatgactgtttaaagttttaacagGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCTTGAGGCTGCTAGGGATGACTTTGTTTTCCAATTTGAGTCCCATGCTGAA
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-------------------------------gttcgtggc--tttcgagaccggagatctcgtaatcttacttttggttttcttttcgttgttcta---gACCGGAGGATGTATATCATGTTACAGTGATGCCTTGTTATGACAAGAAGCTGGAAGCTTCTCGGGACGACTTTATATTCGCTCTAGAGAACGGGGCCTCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6072667|gb|AW102054.1|AW102054EST: ACAATTGGAGTTATCATAAAGAACTATGTGTGCCAAGAATTAGGACTCAG GCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCT
genomic: ACAATTGGAGTTATCATAAAGAACTATGTGTGCCAAGAATTAGGACTCAGgttgcatatt ... gttttaacagGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccagagagttatatgcacagtaaaacacttgaatgactgtttaaagttttaacagGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCTTGAGGCTGCTAGGGATGACTTTGTTTTCCAATTTGAGTCCCATGCTGAA
tgtttaaagttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgttattcatatactcatgatatattttggcatgatgcaatttccagagagttatatgcacagtaaaacacttgaatgactgtttaaagttttaacagGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCTTGAGGCTGCTAGGGATGACTTTGTTTTCCAATTTGAGTCCCATGCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - -catatac
- - - - - - - - -catgata
- - - - - - - - - - - - - - - -gcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgactg