1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtatcatactggtttactgttcaattttttttgctgaattttattattatccctccaatgagcctcccgttatggcatttttgtcaatggttgttttcttccatagGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAGGATGCGGAGCGCTGTATCA
species | Glycine max |
transcript | GLYMA16G23010.6 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAG GTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTEST: gi|21675874|gb|BQ628225.1|BQ628225
genomic: CAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGgtgagtatca ... tcttccatagGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGT
EST: AGAGGAGCATTTCTCCAAGGAAGGAAAG GTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTEST: gi|120532707|gb|EH260840.1|EH260840
genomic: AGAGGAGCATTTCTCCAAGGAAGGAAAGgtgagtatca ... tcttccatagGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGT
EST: CAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAG GTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGT
genomic: CAAGGGTCACTGAAAGAGACCTAGAGGAGCATTTCTCCAAGGAAGGAAAGgtgagtatca ... tcttccatagGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGT
cctccaatgagcctcccgttatggcatttttgtcaatggttgttttcttccatagGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAGGATGCGGAGCGCTGTATCA
ttgttttcttccat CT-rich tract
atttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcatactggtttactgttcaattttttttgctgaattttattattatccctccaatgagcctcccgttatggcatttttgtcaatggttgttttcttccatagGTTTCTTCATGTTTTCTTGTGGTGGAGCCCCGTACACGGATTTCTCGTGGTTTTGCTTTTGTTACAATGGAATCTGCTGAGGATGCGGAGCGCTGTATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG