1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ggggacgccagggagggttttatttacagttgtcatgctcatacttggagtttccataaaatataatactcctttggtaaatttatgttttttcttccagTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATGGGATTGGATTGGTCAACTCCAAATCACGGTCCAATACAAAGTGCAAGAA
species | Glycine max |
transcript | GLYMA13G35120.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACCATGGGGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACACAG TCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATGEST: gi|192327227|gb|FK019534.1|FK019534
genomic: ACCATGGGGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACACAGgtttttatct ... tttcttccagTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATG
EST: ACCATGGGGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACACAG TCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATGEST: gi|10845021|gb|BF068210.1|BF068210
genomic: ACCATGGGGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACACAGgtttttatct ... tttcttccagTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATG
EST: ACCATGGGGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACTCAG TCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATGEST: gi|13481676|gb|BG511019.1|BG511019
genomic: ACCATGGGGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACACAGgtttttatct ... tttcttccagTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATG
EST: ACCATGGGGTATTTGTCTGGGGAGACTCGTGGATCAGTGCTAAAACACAG TCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATG
genomic: ACCATGGGGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACACAGgtttttatct ... tttcttccagTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATG
tggagtttccataaaatataatactcctttggtaaatttatgttttttcttccagTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATGGGATTGGATTGGTCAACTCCAAATCACGGTCCAATACAAAGTGCAAGAA
tttatgttttttcttc CT-rich tract
tttggtaaatttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggggacgccagggagggttttatttacagttgtcatgctcatacttggagtttccataaaatataatactcctttggtaaatttatgttttttcttccagTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCATCAAATGGGATTGGATTGGTCAACTCCAAATCACGGTCCAATACAAAGTGCAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA