1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcagaagtctttttgagtctgttccttaactcagcgcagcaacttcgttagtagatgatattcttgacaatctaacatttgacgtgtgctgtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCGAAAGATAAATCAGATCAGAAG
species | Glycine max |
transcript | GLYMA13G26280.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCG TTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCGEST: gi|207763617|gb|GD736676.1|GD736676
genomic: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCGgtgatgtttc ... gtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCG
EST: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCG TTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGAEST: gi|254339871|gb|GR857996.1|GR857996
genomic: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCGgtgatgtttc ... gtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGA
EST: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCG TTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCGEST: gi|192324640|gb|FK018736.1|FK018736
genomic: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCGgtgatgtttc ... gtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCG
EST: CAAGAATCATCCG TTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCGEST: gi|192312700|gb|FK004388.1|FK004388
genomic: CAAGAATCATCCGgtgatgtttc ... gtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCG
EST: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCG TTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATATEST: gi|9565078|gb|BE474587.1|BE474587
genomic: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCGgtgatgtttc ... gtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGAT--
EST: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCG TTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCGEST: gi|192312701|gb|FK004389.1|FK004389
genomic: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCGgtgatgtttc ... gtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCG
EST: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCG TTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCG
genomic: CCAGGACTGATATTTCTACAGATGGTGACACTGATGACAAGAATCATCCGgtgatgtttc ... gtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCG
cgttagtagatgatattcttgacaatctaacatttgacgtgtgctgtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCGAAAGATAAATCAGATCAGAAG
tattttt CT-rich tract
tgtattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcagaagtctttttgagtctgttccttaactcagcgcagcaacttcgttagtagatgatattcttgacaatctaacatttgacgtgtgctgtatttttagTTTGATAGAAATCAAGCCCTTACTGCTGTTTCCGACTCTAGTGACAGATCGAAAGATAAATCAGATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - ctgttcc
- - - - - - - - - - - - - - - - - cgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgct