1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atacacggcacattacattgcacactcaatgtgcgtgaaggaacagaaaattctaattttataaaatagtctctgaagctttgatcattctactagtcagGTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG
species | Glycine max |
transcript | GLYMA20G36380.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGGATCCTTCGATGGCACCGATCTTAATAGCATCGAAGCTGGATGGCAG GTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGEST: gi|58016541|gb|CX703283.1|CX703283
genomic: CAGGATCCTTCGATGGCACCGATCTTAATAGCATCGAAGCTGGATGGCAGgtactccttc ... tactagtcagGTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGG
EST: CAGGATCCTTCGATGGCACCGATCTTAATAGCATCGAAGCTGGATGGCAG GTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGG
genomic: CAGGATCCTTCGATGGCACCGATCTTAATAGCATCGAAGCTGGATGGCAGgtactccttc ... tactagtcagGTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGG
gaaaattctaattttataaaatagtctctgaagctttgatcattctactagtcagGTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG
tcattct CT-rich tract
ttctaattttataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacacggcacattacattgcacactcaatgtgcgtgaaggaacagaaaattctaattttataaaatagtctctgaagctttgatcattctactagtcagGTCAGTCCGGAGCTCTATGGTGACAGCAGACCAAGATTGTTCACTTATTGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- -cacggca
- - - - - - - - - - cacactc
- - - - - - - - - - - - - -aatgtgc
- - - - - - - - - - - - - - - - - gtgaagg
- - - - - - - - - - - - - - - - - - - - -aacagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaata