1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actaataccatagaaaattggaaattaccattgcatttttgtctagtttctccttgattttgagcaatcttattaattttcgttacaatttgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTTCTTTTAGTTGTAAGGATGAAAGCAATGTGGTTAGTGGTGACTCTATCT
species | Glycine max |
transcript | GLYMA20G28720.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|14990114|gb|BI315787.1|BI315787
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|151401977|gb|EV271790.1|EV271790
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|24135390|gb|BU925900.1|BU925900
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|4396360|gb|AI495357.1|AI495357
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAEST: gi|192306173|gb|FG996815.1|FG996815
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGA
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACGG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|6848389|gb|AW350679.1|AW350679
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|151407441|gb|EV277256.1|EV277256
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|22541388|gb|BU091231.1|BU091231
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: CCAAATAAGCTGAAGGC-CAG GCTTATGCT-AACTT-TCGAGGAAGAAGGCATAGAAACT-CTGCGGTGGTTEST: gi|22541423|gb|BU091266.1|BU091266
genomic: CCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGC-GTGGTT
EST: GTGCTGACTTAATAGCCTTTGACACAATTCCAAATAAGCTGAAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|15814658|gb|BI786933.1|BI786933
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|298178797|gb|HO024532.1|HO024532
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|192334698|gb|FK025231.1|FK025231
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|6566795|gb|AW234427.1|AW234427
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: TTTGAAACAATTCCAAATAAGCTGNAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|151406337|gb|EV276152.1|EV276152
genomic: TTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTEST: gi|58018094|gb|CX704836.1|CX704836
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
EST: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCTCAG GCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
genomic: GTGCTGACTTAATAGCCTTTGAAACAATTCCAAATAAGCTGGAGGCACAGgtatttacta ... tgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTT
gtttctccttgattttgagcaatcttattaattttcgttacaatttgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTTCTTTTAGTTGTAAGGATGAAAGCAATGTGGTTAGTGGTGACTCTATCT
aatcttattaattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actaataccatagaaaattggaaattaccattgcatttttgtctagtttctccttgattttgagcaatcttattaattttcgttacaatttgataaatagGCTTATGCTGAACTTCTCGAGGAAGAAGGCATAGAAACTCCTGCGTGGTTTTCTTTTAGTTGTAAGGATGAAAGCAATGTGGTTAGTGGTGACTCTATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA