1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcacattgttaaactcaatttaaccataagctataatttaaaggttgaacacatttgggaagtatgtaaattaaattaactagttggttggttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAAAATTGTGGCGGAGTACTACCCAGGAAGGCTATGCAAAGCGTTTGTCAT
species | Glycine max |
transcript | GLYMA20G28380.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCGACCATGCCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAA GCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAEST: gi|193614953|gb|FK564671.1|FK564671
genomic: TTCGACCATGCCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAAgtaagtgcaa ... gttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGA
EST: CCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAA GCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGA
genomic: CCAAAAAACGTAGAACAATTCGTGATGCTTTTTGACGCAAgtaagtgcaa ... gttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGA
tgaacacatttgggaagtatgtaaattaaattaactagttggttggttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAAAATTGTGGCGGAGTACTACCCAGGAAGGCTATGCAAAGCGTTTGTCAT
aattaac putative branch site (score: 2)
aagtatgtaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcacattgttaaactcaatttaaccataagctataatttaaaggttgaacacatttgggaagtatgtaaattaaattaactagttggttggttgttgcagGCTTTTACAGATCAGCATCTGCTTTCATGAACCTATTACTACCAGCACTGAAAATTGTGGCGGAGTACTACCCAGGAAGGCTATGCAAAGCGTTTGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG