1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aatgaatcctctcacatgagattttcacatgacaggcagcactgtccccataatttttacggttcattaatttcttaatgacttatttctctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATTTGGGGTGTTTGCTTCTTGAATGTAGTGCCAAAACAAGGGAAAATGTGG
species | Glycine max |
transcript | GLYMA19G37020.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGEST: gi|192323686|gb|FK015992.1|FK015992
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAG
EST: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATEST: gi|192332579|gb|FK025684.1|FK025684
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
EST: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATEST: gi|16345184|gb|BI970779.1|BI970779
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
EST: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATEST: gi|192328600|gb|FK023576.1|FK023576
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
EST: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATEST: gi|192328601|gb|FK023577.1|FK023577
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
EST: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATEST: gi|192329516|gb|FK022208.1|FK022208
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
EST: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATEST: gi|151393016|gb|EV262891.1|EV262891
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
EST: CAACTAATCAGGATTGTGTGGAGATACTAGTTGGAAATAAAGTTGATAGA GATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
genomic: CAACTAATCAGGATTGTGTGAAGATACTAGTTGGAAATAAAGTTGATAGAgtaagtttta ... ctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGAT
ccccataatttttacggttcattaatttcttaatgacttatttctctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATTTGGGGTGTTTGCTTCTTGAATGTAGTGCCAAAACAAGGGAAAATGTGG
tcttaat putative branch site (score: 3)
cttatttctctatttc putative PPT
attaatttcttaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaatcctctcacatgagattttcacatgacaggcagcactgtccccataatttttacggttcattaatttcttaatgacttatttctctatttctagGATACTGAAAGGGCTGTGAGCAGGGAAGAGGGTTTAGCACTTGCTAAAGATTTGGGGTGTTTGCTTCTTGAATGTAGTGCCAAAACAAGGGAAAATGTGG
- - - tcctctc
- - - - - - -acatgag
- - - - - - - - - - - - - acatgac
- - - - - - - - - - - - - - - - - - - - - - -ccccata