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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctccgttcattctttctgttaagtttgtaatgtccattatatcaaccaaaatttaatgtatagGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAG

Basic information

species Glycine max
transcript GLYMA17G01940.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G01940.2 (Glycine max), 3'ss of exon 4
lower sequence: PP1S303_66V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------gtaaat-ctccgttcattctttctgttaagtttgtaatgtccattatatcaaccaaaatttaatgtatagGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAG
                              | || | || || |        |||    ||     ||     || ||  |      ||   |  |  |||  |     |||| | | |||||| |||||||||||||||||||||||||| | |||||  ||
aaggaatgcgcttgcattgtatctgataaagaaagtgctacgctagaatgacctgcattgtgcaccatagaatttctaatatatgttatagtaattgcagGAACGACAAGGAGAGACGTTTGATGCAGATAACCCTGAGCATATGAAATGGATCTATGATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699694|gb|BW652079.1|BW652079
EST:     GAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAG                         GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGG
genomic: GAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGgtaaatctcc ... taatgtatagGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGG
EST: gi|254338438|gb|GR849856.1|GR849856
EST:     GAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAG                         GTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGG
genomic: GAACTGCTGCCCACTGTATTGAATATGCCCACTTGATTAAGTGGAATGAGgtaaatctcc ... taatgtatagGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttctgttaagtttgtaatgtccattatatcaaccaaaatttaatgtatagGTTCATGGCGGAGTGGCTTTTGATCCAGATAACCCTGAGCATATGAAATGGGTTTATGACGAG
                                          atttaat  putative branch site (score: 4)
                           attatatcaaccaaaa  TA-rich tract