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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgcttttgatatttcatccttattgttcttaatactgtgatattattggtatgacactttaaacaagtttcttcttagtagtctattatcattgcttgtttgtgcagGATCTGCCTCGAACATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAG

Basic information

species Glycine max
transcript GLYMA10G44110.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os05g38950.2 (Oryza sativa), 3'ss of exon 4
----------------------gtatttgcttttgatatttcatccttattgttcttaatactgtgatattattggtatgacactttaaac--aagtttcttcttagtagtc-tat-tatcattgcttg--tttgtgcagGATCTGCCTCGAACATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAG
                         |||  |||| ||||   |  ||  || |  |  |  ||  ||| ||  |  | |  |  ||| | |   |   |||    || || | ||| |  |||| || |  |   | |||||  ||||| |||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||| || |||   || |||||| |||| || ||  |||
gtaggtcactgagtccaaatttccttttttttttaatataaaaagctagttttattggaggctaggatttttcttatttagcgtttttatctggaaaatctgacaagaagccgtatctgccatttctgggctccttacagGACTTGCCTAGAACTTTTCCAGGTCATCCTGCTTTAGACGAGGATGGAAGAAATGCTTTGAGACGTTTGCTTCTAGCTTATGCTAGACACAATCCAGCAG

upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G094951_T01 (Zea mays), 3'ss of exon 4
gtatttgcttttgatatttcatccttattgttcttaatactgtgatattattggtatgacactttaaacaagtttcttcttagtagtctattatcattgcttgtttgtgcagGATCTGCCTCGAACATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAG
|||  || || ||      |||  | |  |   |  ||  ||| || || | | ||  | |   |         | | || || |||| | |||   |  |  |   |  ||||  ||||  |||| |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||  || |||||   ||| || || ||||
gtagctgtttatgga----cattttcacgggatt--atcttgt-attttttcgataaaatatactg-------ctgtactgag-agtccaatatgcatcttgatccttatagGACTTGCCCAGAACTTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAATCCATCAG

upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G051050_T01 (Zea mays), 3'ss of exon 4
gtatttgcttttg-atatttcatccttattgttcttaatactgtgatattattggtatgacactttaaacaagtttcttcttagtagtctattatcattgcttgtttgtgcagGATCTGCCTCGAACATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAG
|||  || || || | ||||   |      |  | |  || | |     ||    |||    || |     |   |||    | ||| ||   ||   | | |        ||||| ||||  |||| |||||||||||||||||||| || |||||||| ||||||||||||||||| || ||||  || |||||   ||| ||||| ||||
gtagctgtttatgtacattttcacggggaagcaccttgtattttttggataa-aatatactgctgtgctggaaagtct----aatagactccaatatgtaccttccctcatagGATTTGCCCAGAACTTTTCCTGGTCATCCTGCTTTAGATGAGGATGGAAGAAATGCTTTGAGACGCTTGCTTATAGCTTATGCGAAACACAACCCATCAG

upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 3'ss of exon 4
gtatttgcttttgatat-ttcatccttattgttcttaatactgtgatattattggtatgacactttaaacaagtttcttcttagtagtctattatcattgcttgttt---gtgcagGATCTGCCTCGAACATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAG
||| |  ||    || | |||| ||||     |||  ||   |||||       |  || |  | |    |||||     | || | |||  |  | ||||||||||   || |||||  | ||||| ||||||||||||||||||||| | || || ||||||||||||||| |  | || || |||||||| |||||| | ||||| || || |
gtagt-actcaaaatttattcagccttgaccctctctatgtagtgatgc----agcgtggc-ttatgctgaagttga---tcaggattcttatgccgttgcttgtttaaagtacagGACTTACCTCGGACATTTCCTGGTCATCCTGCTCTAGATGATGATGGTAGAAATGCTCTACGGCGTTTGCTTACTGCTTATGCTAGGCATAATCCTTCTG

upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------gtatttgcttttgatatttcatccttattgttcttaatactgtgatattattggtatgacactttaaaca-agtttcttcttagtagtctattatcattgcttgtttgtgcagGATCTGCCTCGAACATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAG
                                       | |||| |||| |  | |   | || ||      || | | | |  | |||| ||  |  || ||||   ||  | | || |  |    |  |  ||| ||      |||||||| ||||||||||||| || |||||||||||| | || ||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| |
gtcattacatgcatatgctttgaaatttagtactcaatttctttgattttcaggtgttgcctttgttaaatccaaaaatctcaagtcattgttactaatctctaaatgcaggatttactgatcaaaaaaaaaaaatttctaa---atgcagGATTTGCCTCGAACATTCCCAGGTCATCCTGCTCTAGATGAGGATGGTAGAAATGCTTTGAGGCGTTTACTTACGGCATATGCTCGACACAACCCCTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacactttaaacaagtttcttcttagtagtctattatcattgcttgtttgtgcagGATCTGCCTCGAACATTTCCTGGTCATCCTGCTTTGGACGAGGATGGTAGAAATGCTTTGAGACGATTACTTACTGCATATGCTCGACATAACCCCTCAG
                                          cttgttt  CT-rich tract
                               tattatcatt  TA-rich tract