1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gagtatttgttctttctggcaaaggcttaaattttatcaattgtttgtttcctcctccctctctgttattattattgacatttttggttgtacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATT
species | Glycine max |
transcript | GLYMA08G19620.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|31307756|gb|CD392959.1|CD392959
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|4292623|gb|AI441931.1|AI441931
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTAATTTCTGGGAATGAATGAGGATGATGCT-CAAATT ATGTTTT-CAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|298180054|gb|HO025269.1|HO025269
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|192297847|gb|FG988331.1|FG988331
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTACTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|151407739|gb|EV277554.1|EV277554
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTCTGCGGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|8403794|gb|BE059361.1|BE059361
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGANGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|192322362|gb|FK014603.1|FK014603
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|9564042|gb|BE473551.1|BE473551
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|33387927|gb|CA851134.1|CA851134
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|208288358|gb|GE084371.1|GE084371
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|151409137|gb|EV278945.1|EV278945
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|192334804|gb|FK025953.1|FK025953
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|58020870|gb|CX707612.1|CX707612
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|192294140|gb|FG986229.1|FG986229
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|58024842|gb|CX711583.1|CX711583
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|58020675|gb|CX707417.1|CX707417
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|254347672|gb|GR853921.1|GR853921
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|151409264|gb|EV279072.1|EV279072
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|58017178|gb|CX703920.1|CX703920
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGEST: gi|192295778|gb|FG992604.1|FG992604
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
EST: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATT ATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTTTCAGATGCTTATTG
genomic: TAAAGACACTGCTTTATTTCTGGGAATGAATGAGGATGATGCTACAAATTgtaagttatt ... tacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTG
tgtttcctcctccctctctgttattattattgacatttttggttgtacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATT
tattgac putative branch site (score: 2)
tgttattattattgac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtatttgttctttctggcaaaggcttaaattttatcaattgtttgtttcctcctccctctctgttattattattgacatttttggttgtacaatttagATGTTTTGCAGCAAGGCTGGACTGTGGACCCTGCCTCTCAGATGCTTATTGTGAAGAAGCAACCTGTTGTGACAGAGCAGAAACTTGATCCGAGTAAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG