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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttatttttcactttaatttttcatactgtttatgattgttgtgtcttgcgtctaaacgttgagtgttgttttctctgtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG

Basic information

species Glycine max
transcript GLYMA06G18120.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G180625_T02 (Zea mays), 3'ss of exon 4
---gtttttatttttcactttaatttttcatactgtttatgattgttgtgtcttgcgtctaaacgttgagtgttgttttctctgtgaact--cagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG
    |     | |  | ||          | || | ||  | ||   ||||  |   | | | |    ||||||     | ||| ||     ||| ||||| || |||||||| |||||     |||| |||||     | || ||||||||||| || ||||| || |||||||||||||| |||||| |||||
gtgctccccctctcccgctccttccagagacacggattgcgtttac-gtgttctagctgtgagct---agtgtttgaaccgctgcgagtctacagGAACCCCGAGGAGATCCCGTGGGGTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGACAAGGCTGCTGCACATCTGAAG

upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 4
gtttttatttttcactttaatttttcatactgtttatgattgttgtgtcttgcgtctaaacgttgag-tgttgtttt---ctctgtgaact--cagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG
       |  | | || |  |  ||| | | |     || ||     | ||||||   | |  |||| |  ||| ||     ||| ||     ||| |||||||| || ||||| |||||     |||| |||||     | || ||||||||||| || ||||| || |||||||||||||| |||||| | |||
------gtgctcccctctcctgcttcgtccagacgtggactg--agcttttgcgttcgagctgtgagctaatgtattaactgctgcgattctacagGAACCCTGAGGAAATCCCGTGGGGTGAGGCTGGCGCTGAGTATGTCGTGGAGTCCACCGGCGTCTTCACTGACAAGGACAAGGCTGCTGCACATCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279450|gb|BI943443.1|BI943443
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|7925993|gb|AW832019.1|AW832019
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|209696750|gb|BW666965.1|BW666965
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|16281248|gb|BI944389.1|BI944389
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|192323790|gb|FK015601.1|FK015601
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|254341092|gb|GR854820.1|GR854820
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|16347774|gb|BI973369.1|BI973369
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|13788770|gb|BG651361.1|BG651361
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCATTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGCATCCC
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAG-ATCCC
EST: gi|207683194|gb|GD665915.1|GD665915
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGTAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTG
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGA-GATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTG
EST: gi|16284382|gb|BI946055.1|BI946055
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|10845968|gb|BF068973.1|BF068973
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|209726993|gb|BW675383.1|BW675383
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|209714020|gb|BW684469.1|BW684469
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|21678433|gb|BQ630784.1|BQ630784
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         GAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|10233232|gb|BE802120.1|BE802120
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|254326539|gb|GR841131.1|GR841131
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|16277404|gb|BI942362.1|BI942362
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|15815033|gb|BI787308.1|BI787308
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|209716380|gb|BW676907.1|BW676907
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|10845480|gb|BF068599.1|BF068599
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|4260292|gb|AI416788.1|AI416788
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|209719191|gb|BW679770.1|BW679770
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|298191622|gb|HO039101.1|HO039101
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|298186020|gb|HO031181.1|HO031181
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|16283964|gb|BI945834.1|BI945834
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|192325379|gb|FK017165.1|FK017165
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|18041455|gb|BM309749.1|BM309749
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|26058106|gb|CA801020.1|CA801020
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|213589920|gb|DB959475.1|DB959475
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|15813678|gb|BI785953.1|BI785953
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|15812923|gb|BI785198.1|BI785198
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|16278375|gb|BI942871.1|BI942871
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|105633925|gb|DW247288.1|DW247288
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|16276761|gb|BI942030.1|BI942030
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGGTAAACTGGAGCTGACATCATTGTTG
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGG-TCAACTGGAGCTGACATCATTGTTG
EST: gi|193586520|gb|FK543012.1|FK543012
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTT-GGACACAG                         AAACCCTGAAGAGATCCCAT
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCAT
EST: gi|37995569|gb|CF807158.1|CF807158
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|209696843|gb|BW680465.1|BW680465
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|31561360|gb|CD487198.1|CD487198
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|16283997|gb|BI945851.1|BI945851
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|254318722|gb|GR828666.1|GR828666
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|213587773|gb|DB955635.1|DB955635
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|15589747|gb|BI674363.1|BI674363
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|298165045|gb|HO011094.1|HO011094
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|213620397|gb|DB957294.1|DB957294
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|27809112|gb|CB063534.1|CB063534
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|8284034|gb|BE021593.1|BE021593
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|31561753|gb|CD487591.1|CD487591
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGTGTCAACTGGAGCTGACATCATTGTTG
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGG-GTCAACTGGAGCTGACATCATTGTTG
EST: gi|208036020|gb|GD833025.1|GD833025
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGTAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|213604532|gb|DB970652.1|DB970652
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|209698725|gb|BW660726.1|BW660726
EST:     GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA
EST: gi|20449845|gb|BQ253969.1|BQ253969
EST:     GAGAAGACCCTTCTCTTCGGTGACCAGGCATTCACTGTTTTTGGACACAG                         AAACCCTGAAGAGATCCCATGCGGGTCAACTGGAGCTGACATCATTGTTGA
genomic: GAGAAGACCCTTCTCTTCGGTGACAAGGCAGTCACTGTTTTTGGACACAGgtttttattt ... gtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattgttgtgtcttgcgtctaaacgttgagtgttgttttctctgtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG
                  gtctaaa  putative branch site (score: 3)
                                     ttttctctgt  putative PPT
                                  ttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtttttatttttcactttaatttttcatactgtttatgattgttgtgtcttgcgtctaaacgttgagtgttgttttctctgtgaactcagAAACCCTGAAGAGATCCCATGGGGGTCAACTGGAGCTGACATCATTGTTGAGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG