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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatatgtttcgagattcatcgtttttatgctatgtgcatgcacctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA

Basic information

species Glycine max
transcript GLYMA06G18120.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 3'ss of exon 5
aaatatgtttcgagattcatcgtttttatgctatgtgcatgcacctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
  || |  | ||| |  || | | |   || | ||    ||      ||| | |   | |   |||  |   | ||       | |   | | ||   |||||||||| ||||||||  | || ||||| ||||| ||||||||||||||||||||||||||||| |||||| | ||||||||||| ||  | || ||| 
gtattttctgcgaaacccaacatgtcattgtt-tgattgtggtgtcataacaattcatatgaagaatgattctcatggtatcatatgcgtttcaatatagGGTGGTGCTAAGAAGGTCGTCATCTCTGCTCCCAGCAAGGATGCCCCCATGTTTGTTGTTGGTGTCAATGAGAAGGAGTACAAGCCTGACATCGACATTG

upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g38920.1 (Oryza sativa), 3'ss of exon 5
aaatatgtttcgagattcatcgtttttatgctatgtgcatgcacctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
                     ||   | | || |||  ||    ||||     | || ||   |    |  |   ||  ||  || ||||    |  ||||||||||||||||||||  | |||||||| ||||| || || ||||||||||| ||||||||||| || ||| | ||||||||| | ||  || | ||| 
---------------------gtacat-tcctgtgtcaatttttctgt-----tcagggtcaagctgtagatctgttc-tcaatcatttttcatatgcagGGTGGTGCCAAGAAGGTCGTCATTTCTGCTCCCAGCAAAGACGCCCCCATGTTCGTTGTTGGTGTCAACGAGAAGGAGTACAAGTCTGACGTTAACATTG

upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 4
--aaatatgtttcgagattcatcgtttttatgctatgtgcatgc-acctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
  |  | |  |  || |   |   || || |||      | ||   | |    |||  | |   | | |     |    ||   || || ||  | ||  ||||||||||||||||||||| | || |||||||| || || ||||| || ||||||||    ||||| || ||| || ||||||   ||||  |||||||| 
ttatttttactctgaaaagtac--ttgttgtgcatctcccttgttgcataagttagctatttcggtgcattttttatgcttacatggctgttc-tgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATGTTTGTCTGCGGTGTCAACGAGGACAAGTACACTTCAGATATTGATATTG

upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G180625_T02 (Zea mays), 3'ss of exon 5
--------aaatatgtttcgagattcatcgtttttatgctatgtgcatgcacctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
            |||  ||  || |  ||  ||   |  ||  || ||   | | |  || |   |||     | |   ||| |||      || || | | ||  |||||||||||||||||||| |||| |||||||| || || ||||| |||||||||||||||||||| |||||| || ||||||   | ||  || | ||| 
tagtgcagtgtcatggctcatgacttgtcacttcacttttac-tgtattttcgtctgctaatggatgtttctgatagctttatttt-----cctattgaatgac--agGGTGGTGCCAAGAAGGTTGTTATCTCTGCCCCAAGCAAAGATGCGCCCATGTTTGTTGTTGGTGTCAATGAGGACAAGTACACCTCCGATGTTAACATTG

upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G071630_T02 (Zea mays), 3'ss of exon 4
aaatatgtttcgagattcatcgtttttatgctatgtgcatgcacctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
              ||   |   |||||| | | | | ||  |||| || ||||    | |  | ||  |  |||   |  | || | ||  |    ||||||||||||||||||||| | |||||||| || || ||||||||||||||||| ||||||||||| || ||| | ||||||||| | ||  |  | ||| 
------------gtataattttgttttattccagg-gtatatacct-tattagttccagcattggaagcatctaac--gattttcctgttgcttttacagGGTGGTGCCAAGAAGGTTGTCATTTCTGCTCCTAGCAAGGATGCCCCCATGTTCGTTGTTGGTGTCAACGAGAAGGAGTACAAGTCTGACATCAACATTG

upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 5
aaatatgtttcgagattcatcgtttttatgctatgt--gcatgcacctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
     |   ||      ||||  || ||   | |||  |  || |  |      || |   | |        | ||  ||  || || ||||   |   ||||||||||||||||||||| |||| |||||||| || || || || |||||||||||||||||||| |||||| || ||||||   | ||  || | ||| 
-ctcgttactcttatcacatcacttctactttgtgtcagattggattttcctctgttaaattggatgtttctgatagctttactttccttttga-atgacagGGTGGTGCCAAGAAGGTTGTTATCTCTGCCCCAAGCAAAGACGCACCCATGTTTGTTGTTGGTGTCAATGAGGACAAGTACACCTCGGATGTTAACATTG

upper sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G176307_T01 (Zea mays), 3'ss of exon 5
aaatatgtttcgagattcatcgt----ttttatgctatgtgcatgcacctgtaatagta--agtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
   |||  |     |   || ||    || |||     | | ||  |||| || ||||   |||||   | || ||  ||||  |  | || | ||  |    ||||||||||||||||||||| | || ||||| || || |||||||||||||||||||| |||||||| || ||| | ||||||||| | ||  || | ||| 
--gtataatcatctacctattgtgttattctatttccagggtatatacct-tactagtcctagtgttatggaagaatctaat--ggttttcctgttgcttttacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCTCCTAGCAAGGATGCCCCCATGTTTGTCGTTGGTGTCAACGAGAAGGAGTACAAGTCTGACATTAACATTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16279450|gb|BI943443.1|BI943443
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|209696750|gb|BW666965.1|BW666965
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16281248|gb|BI944389.1|BI944389
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|192323790|gb|FK015601.1|FK015601
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGCGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|254341092|gb|GR854820.1|GR854820
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16347774|gb|BI973369.1|BI973369
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16284382|gb|BI946055.1|BI946055
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCGCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|10845968|gb|BF068973.1|BF068973
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|209726993|gb|BW675383.1|BW675383
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|209714020|gb|BW684469.1|BW684469
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|21678433|gb|BQ630784.1|BQ630784
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCC
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCC
EST: gi|10233232|gb|BE802120.1|BE802120
EST:     AGTCCACCGGAGTATTCACCGATAAGGACAATGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCTCCAGTCAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|254326539|gb|GR841131.1|GR841131
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16277404|gb|BI942362.1|BI942362
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15815033|gb|BI787308.1|BI787308
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|209716380|gb|BW676907.1|BW676907
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|4260292|gb|AI416788.1|AI416788
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAG
EST: gi|209719191|gb|BW679770.1|BW679770
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|298191622|gb|HO039101.1|HO039101
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|298186020|gb|HO031181.1|HO031181
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAGGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16283964|gb|BI945834.1|BI945834
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|192325379|gb|FK017165.1|FK017165
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|18041455|gb|BM309749.1|BM309749
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|26058106|gb|CA801020.1|CA801020
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213589920|gb|DB959475.1|DB959475
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15813678|gb|BI785953.1|BI785953
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15812923|gb|BI785198.1|BI785198
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16278375|gb|BI942871.1|BI942871
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|105633925|gb|DW247288.1|DW247288
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16276761|gb|BI942030.1|BI942030
EST:     AGTCCACCGGAGTTNTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTG
EST: gi|37995569|gb|CF807158.1|CF807158
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|209696843|gb|BW680465.1|BW680465
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|31561360|gb|CD487198.1|CD487198
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|16283997|gb|BI945851.1|BI945851
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAAGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|254318722|gb|GR828666.1|GR828666
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213587773|gb|DB955635.1|DB955635
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|15589747|gb|BI674363.1|BI674363
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|298165045|gb|HO011094.1|HO011094
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213620397|gb|DB957294.1|DB957294
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|27809112|gb|CB063534.1|CB063534
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|8284034|gb|BE021593.1|BE021593
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAA                         GGTGGTGCCAAAGAAG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAA-GAAG
EST: gi|20812740|gb|BQ297218.1|BQ297218
EST:     ATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: ATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|213604532|gb|DB970652.1|DB970652
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|209698725|gb|BW660726.1|BW660726
EST:     AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: AGTCCACCGGAGTTTTCACCGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
EST: gi|17022056|gb|BM093090.1|BM093090
EST:     CGATAAGGACAAGGCTGCCGCACATTTGAAG                         GGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG
genomic: CGATAAGGACAAGGCTGCCGCACATTTGAAGgtttctactt ... attaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA
                                            tattaac  putative branch site (score: 1)
                                  tctgtctttttatt  CT-rich tract
                   aaaaaagttaatttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaatatgtttcgagattcatcgtttttatgctatgtgcatgcacctgtaatagtaagtgtagggaaaaaagttaatttgtctgtctttttattaacccagGGTGGTGCCAAGAAGGTTATTATTTCTGCCCCCAGTAAGGATGCCCCCATGTTTGTTGTTGGTGTTAATGAGCACGAGTACAAGCCAGAGCTTGATATTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - tttatgc
- - - - - - - - - - - - - - - - - - -catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaa