1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagacttgattggtgcagttcccaagtttactatacccctttaattcctgattatttaactatactttaagggattgatgagtctgttctgctgttgcagTATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAGGTTGTGTCTAATCTTGAAAAGTTGAAGCTCCCCACTACACATTCTGGTT
species | Glycine max |
transcript | GLYMA02G40900.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAG TATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAGEST: gi|9987823|gb|BE661931.1|BE661931
genomic: GTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatc ... gctgttgcagTATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAG
EST: TCGAATGACTACCATGGGTGTATATGTCCCGTGATTTGCTTCTTGGACAG TATTATTTCGACACATTGGTTCCTCGCATTCCTGTEST: gi|254343401|gb|GR857105.1|GR857105
genomic: TCGAATGACTACAATGGGTGTATATGTCC-GTGATTTGCTTCTTGGACAGgtttgttatc ... gctgttgcagTATTATTTCGACACGTTGTTTCCTCGCATCCCTGT
EST: GTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAG TATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAGEST: gi|254318502|gb|GR832670.1|GR832670
genomic: GTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatc ... gctgttgcagTATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAG
EST: GTCGAATGACTACA-TGGGTGTATATGTCCGTGATTTGCTTCTTGGACAG TATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAG
genomic: GTCGAATGACTACAATGGGTGTATATGTCCGTGATTTGCTTCTTGGACAGgtttgttatc ... gctgttgcagTATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAG
tcctgattatttaactatactttaagggattgatgagtctgttctgctgttgcagTATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAGGTTGTGTCTAATCTTGAAAAGTTGAAGCTCCCCACTACACATTCTGGTT
ttctgct CT-rich tract
attatttaactatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagacttgattggtgcagttcccaagtttactatacccctttaattcctgattatttaactatactttaagggattgatgagtctgttctgctgttgcagTATTATTTCGACACGTTGTTTCCTCGCATCCCTGTTCCTGTATTGCGGCAGGTTGTGTCTAATCTTGAAAAGTTGAAGCTCCCCACTACACATTCTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - tggtgca
- - - - - - - - - ttcccaa
- - - - - - - - - - - - - - - - - -ccccttt
- - - - - - - - - - - - - - - - - - - - - - - cctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggattg