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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttagttgcctggattgttatattgcatctttaattagctttatgataccataatttctcttccccttttttacagCAAGGCCTGCATACTACAAGTATGTTACTATTATGCTCATCTTGAATGCAATTGCACTGTTTGCTTGTGGTATTACAGGAAACGGCACTGCATTTGGTTT

Basic information

species Glycine max
transcript GLYMA20G37380.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213610385|gb|DB984221.1|DB984221
EST:     TGGTTTCATATTGTTCATGTATCATTCTAGGAAAAGAGAAAGGTTACCTG                         CAAGGCCTGCATACTACAAGTATGTTACTATTATGCTCATCTTGAATGCAA
genomic: TGGTTTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCTGgtaagttagt ... ttttttacagCAAGGCCTGCATACTACAAGTATGTTACTATTATGCTCATCTTGAATGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcatctttaattagctttatgataccataatttctcttccccttttttacagCAAGGCCTGCATACTACAAGTATGTTACTATTATGCTCATCTTGAATGCAATTGCACTGTTTGCTTGTGGTATTACAGGAAACGGCACTGCATTTGGTTT
       ctttaat  putative branch site (score: 4)
                           ccataatttctcttcc  putative PPT
        tttaattagctttat  TA-rich tract