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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcaattctgtattgttgactattgtttacagcttatataattttcttataaacaaataacctctggtgtttgttatttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAACATCCTGTCTTGATTTTAAGGTTCTTTTGCTATTGGTATTTTCTAATGG

Basic information

species Glycine max
transcript GLYMA20G37190.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G37190.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0030g01620.t01 (Vitis vinifera), 3'ss of exon 4
----gtaatg--caattctgtattgttgactattgtttacagcttatataattttcttataaacaaataacctctggtgtttgttatttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAACATCCTGTCTTGATTTTAAGGTTC---TTTTGCTATTGGTATTTTCTAATGG
    | | ||   || | || | || |  || ||  |     || || ||| |   |   |      ||    |   |  ||| ||      ||||| ||||||   |||||||||||||| ||||| ||||||||||||| |    ||  |   |  ||  |      |   | | || || ||   ||||||||  
gtaagaagtgaataaatttgcagtggtacctttttct-----ctcatttaactcattctcacctccctatttcccatttcttgcta-----acagACCAAGGCTGGAGATGCTGCCAAGGCCGGAAAGAAGAAATGAGTTTGCTGTGATTTTAGTTGCATCCTGGACCCCATATCTGGCCATGGGG--TTTCTAATA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315878|gb|GR825687.1|GR825687
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|15337472|gb|BI498128.1|BI498128
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|13480907|gb|BG510250.1|BG510250
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|193637974|gb|FK585790.1|FK585790
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|6747868|gb|AW318324.1|AW318324
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|193377428|gb|FK338810.1|FK338810
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|193341135|gb|FK306403.1|FK306403
EST:     GATTCGTGGAGTTAAGTAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAA
genomic: GATTCGTGGAGTTAAG-AAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAA
EST: gi|193464174|gb|FK430520.1|FK430520
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|31470717|gb|CD412745.1|CD412745
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|193696996|gb|FK635310.1|FK635310
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|208248060|gb|GE044398.1|GE044398
EST:     GAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTAGGAAAAAAGAAATGAGTTTTCAA
genomic: GAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCT-GGAAAAAAGAAATGAGTTTTCAA
EST: gi|209703211|gb|BW673345.1|BW673345
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|7146365|gb|AW508287.1|AW508287
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|21601671|gb|BQ612002.1|BQ612002
EST:     GAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: GAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|13791434|gb|BG654025.1|BG654025
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|7924600|gb|AW830626.1|AW830626
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|192303061|gb|FG994179.1|FG994179
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|9983978|gb|BE658086.1|BE658086
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
EST: gi|193390968|gb|FK353752.1|FK353752
EST:     AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTAGAGTTAAGAAG                         ACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA
genomic: AAATGAAGGAGAGAAAGAATAGAGCTAAGAAGATTCGTGGAGTTAAGAAGgtaatgcaat ... atttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttatataattttcttataaacaaataacctctggtgtttgttatttttgcagACAAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGAGTTTTCAAACATCCTGTCTTGATTTTAAGGTTCTTTTGCTATTGGTATTTTCTAATGG
                        aaataac  putative branch site (score: 2)
                                           ttattttt  putative PPT
     atataattttcttata  TA-rich tract