1 5' 3' | 2 5' 3' | 3 5' 3' |
...cccatagtttagggatatgccttcataatgtagtcatttgctctgactctgctggcaaatatcacatgttatggaactatttggatcccaataaccgtagTTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCATGATCTTCAACCACCGAGGCAAGGCCTTTCCTGTGGAAATGGATTTGAAG
species | Glycine max |
transcript | GLYMA19G36750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGGGGAAGTTTCTATTCCTATTACTATCCTCACTCTGAAGATAACAG TTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCATEST: gi|208157503|gb|GD953683.1|GD953683
genomic: GCCGGGGAAGTTTCTA-TCC-A-TAC-ATCCTCACTCTGAAGATAACAGgtaactaact ... ataaccgtagTTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCAT
EST: GCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACAG TTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCAT
genomic: GCCGGGGAAGTTTCTATCCATACATCCTCACTCTGAAGATAACAGgtaactaact ... ataaccgtagTTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCAT
actctgctggcaaatatcacatgttatggaactatttggatcccaataaccgtagTTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCATGATCTTCAACCACCGAGGCAAGGCCTTTCCTGTGGAAATGGATTTGAAG
caataac putative branch site (score: 2)
aaatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cccatagtttagggatatgccttcataatgtagtcatttgctctgactctgctggcaaatatcacatgttatggaactatttggatcccaataaccgtagTTTGTTCCTTGAATGCAGAATTGTCTCTTTACCTGCCAACCTAGACTTCATGATCTTCAACCACCGAGGCAAGGCCTTTCCTGTGGAAATGGATTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - -tatgcct
- - - - - - - - - - - - - aatgtag
- - - - - - - - - - - - - - - - - - - tgctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacatgt