1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...agtattacattttccttttgttcatctttgttctccacttgagaaatttgttacatgtgtccttgttcatactgatgtgtaagtgtaactaaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACT
species | Glycine max |
transcript | GLYMA18G11630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGG TGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCEST: gi|58019358|gb|CX706100.1|CX706100
genomic: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGGtcttgtgctt ... aaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTC
EST: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGG TGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCEST: gi|6072046|gb|AW101493.1|AW101493
genomic: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGGtcttgtgctt ... aaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTC
EST: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGG TGCTGNGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAA-CTTGTTCEST: gi|58016320|gb|CX703062.1|CX703062
genomic: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGGtcttgtgctt ... aaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTC
EST: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGG TGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTC
genomic: TGAAGTTGTTTCTGAGGATGATTGCCTGCGTGCTATTAAGAAACTGAAGGtcttgtgctt ... aaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTC
atttgttacatgtgtccttgttcatactgatgtgtaagtgtaactaaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACT
aactaaa putative branch site (score: 2)
taactaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtattacattttccttttgttcatctttgttctccacttgagaaatttgttacatgtgtccttgttcatactgatgtgtaagtgtaactaaatttcaggTGCTGGGTAGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACT
- - - - - - -ccttttg
- - - - - - - - - - - - - - - - ctccact
- - - - - - - - - - - - - - - - - - - - - - - - - - acatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgatg