1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttagtacctgcactcctttcatatttagccttttccccttcattctgaattctccacatgaaaccaagaaaaaaaaaactgtttttgtcaattcagattatactattattgttgttcactttcaaaaacaaaattatcctaccattttcccacctatgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCTT
species | Glycine max |
transcript | GLYMA17G01960.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATCEST: gi|298195618|gb|HO044009.1|HO044009
genomic: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATTgttagtacct ... acctatgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATC
EST: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATCEST: gi|213596020|gb|DB966295.1|DB966295
genomic: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATTgttagtacct ... acctatgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATC
EST: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATCEST: gi|151411926|gb|EV281737.1|EV281737
genomic: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATTgttagtacct ... acctatgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATC
EST: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATT GGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATC
genomic: GTGAATACACAGGTGCTCCATATTTTGCTGCAATTTCAGCCTTAAAAATTgttagtacct ... acctatgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATC
tattgttgttcactttcaaaaacaaaattatcctaccattttcccacctatgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCTT
ccattttcccacct CT-rich tract
tttcaaaaacaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtacctgcactcctttcatatttagccttttccccttcattctgaattctccacatgaaaccaagaaaaaaaaaactgtttttgtcaattcagattatactattattgttgttcactttcaaaaacaaaattatcctaccattttcccacctatgcagGGTGCAGATCTGTCCCATGTTTTTTGTACAAAAGATGCTGCTCCGGTCATCAAAAGCTACAGTCCTGAGTTGATTGTGCACCCTGTTTTGGAAGAATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA